(27 nodes) Regulation of transcription elongation from RNA polymerase II promoter network (Capitella teleta)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	R7TFS4_CAPTE	Protein kinase domain-containing protein. (346 aa)
	R7TDD1_CAPTE	Uncharacterized protein. (569 aa)
	R7T9U7_CAPTE	WD_REPEATS_REGION domain-containing protein. (564 aa)
	R7U923_CAPTE	Uncharacterized protein. (1081 aa)
	R7UDJ5_CAPTE	RING-type domain-containing protein. (429 aa)
	R7UEB3_CAPTE	Uncharacterized protein; Belongs to the cyclin family. (250 aa)
	R7UJ41_CAPTE	Uncharacterized protein. (270 aa)
	R7ULP4_CAPTE	PWWP domain-containing protein. (105 aa)
	R7UT86_CAPTE	Uncharacterized protein. (631 aa)
	R7UXL5_CAPTE	Uncharacterized protein. (180 aa)
	R7V070_CAPTE	RING-type domain-containing protein. (263 aa)
	R7V163_CAPTE	Uncharacterized protein. (182 aa)
	R7V2Q8_CAPTE	ATP-dependent DNA helicase; Belongs to the helicase family. RecQ subfamily. (622 aa)
	R7V304_CAPTE	Uncharacterized protein. (631 aa)
	R7V5F0_CAPTE	Uncharacterized protein. (175 aa)
	R7V5L8_CAPTE	Uncharacterized protein. (180 aa)
	R7V5R0_CAPTE	Uncharacterized protein. (548 aa)
	R7VIM2_CAPTE	Uncharacterized protein. (537 aa)
	R7U863_CAPTE	Uncharacterized protein. (151 aa)
	R7U645_CAPTE	HDAg domain-containing protein. (419 aa)
	R7U5N8_CAPTE	Transcription elongation factor spt6; Transcription elongation factor that enhances transcription elongation by RNA polymerase II (RNAPII). Belongs to the SPT6 family. (1594 aa)
	R7U0Q6_CAPTE	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family. (528 aa)
	R7U014_CAPTE	Uncharacterized protein. (583 aa)
	R7TVG6_CAPTE	Uncharacterized protein. (752 aa)
	R7TQW0_CAPTE	Uncharacterized protein. (606 aa)
	R7TQI7_CAPTE	RRM domain-containing protein. (372 aa)
	R7TKH5_CAPTE	Transcription elongation factor SPT4; Component of the DRB sensitivity-inducing factor complex (DSIF complex), which regulates transcription elongation by RNA polymerase II; Belongs to the SPT4 family. (117 aa)

Your Current Organism:

Capitella teleta

NCBI taxonomy Id: 283909
Other names: C. teleta, Capitella sp. I, Capitella sp. I AF-2005, Capitella sp. I ECS-2004, Capitella sp. I ES-2005, Capitella sp. MKJ-2016, Capitella teleta Blake, Grassle & Eckelbarger, 2009

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
R7TDD1_CAPTE	R7TFS4_CAPTE	R7TDD1	R7TFS4	Uncharacterized protein.	Protein kinase domain-containing protein.	0.675
R7TDD1_CAPTE	R7TKH5_CAPTE	R7TDD1	R7TKH5	Uncharacterized protein.	Transcription elongation factor SPT4; Component of the DRB sensitivity-inducing factor complex (DSIF complex), which regulates transcription elongation by RNA polymerase II; Belongs to the SPT4 family.	0.923
R7TDD1_CAPTE	R7TQI7_CAPTE	R7TDD1	R7TQI7	Uncharacterized protein.	RRM domain-containing protein.	0.982
R7TDD1_CAPTE	R7TQW0_CAPTE	R7TDD1	R7TQW0	Uncharacterized protein.	Uncharacterized protein.	0.714
R7TDD1_CAPTE	R7U014_CAPTE	R7TDD1	R7U014	Uncharacterized protein.	Uncharacterized protein.	0.987
R7TDD1_CAPTE	R7U0Q6_CAPTE	R7TDD1	R7U0Q6	Uncharacterized protein.	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	0.666
R7TDD1_CAPTE	R7U645_CAPTE	R7TDD1	R7U645	Uncharacterized protein.	HDAg domain-containing protein.	0.986
R7TDD1_CAPTE	R7UEB3_CAPTE	R7TDD1	R7UEB3	Uncharacterized protein.	Uncharacterized protein; Belongs to the cyclin family.	0.708
R7TFS4_CAPTE	R7TDD1_CAPTE	R7TFS4	R7TDD1	Protein kinase domain-containing protein.	Uncharacterized protein.	0.675
R7TFS4_CAPTE	R7TKH5_CAPTE	R7TFS4	R7TKH5	Protein kinase domain-containing protein.	Transcription elongation factor SPT4; Component of the DRB sensitivity-inducing factor complex (DSIF complex), which regulates transcription elongation by RNA polymerase II; Belongs to the SPT4 family.	0.882
R7TFS4_CAPTE	R7TQI7_CAPTE	R7TFS4	R7TQI7	Protein kinase domain-containing protein.	RRM domain-containing protein.	0.853
R7TFS4_CAPTE	R7TQW0_CAPTE	R7TFS4	R7TQW0	Protein kinase domain-containing protein.	Uncharacterized protein.	0.684
R7TFS4_CAPTE	R7U5N8_CAPTE	R7TFS4	R7U5N8	Protein kinase domain-containing protein.	Transcription elongation factor spt6; Transcription elongation factor that enhances transcription elongation by RNA polymerase II (RNAPII). Belongs to the SPT6 family.	0.674
R7TFS4_CAPTE	R7U863_CAPTE	R7TFS4	R7U863	Protein kinase domain-containing protein.	Uncharacterized protein.	0.721
R7TFS4_CAPTE	R7U923_CAPTE	R7TFS4	R7U923	Protein kinase domain-containing protein.	Uncharacterized protein.	0.721
R7TFS4_CAPTE	R7UEB3_CAPTE	R7TFS4	R7UEB3	Protein kinase domain-containing protein.	Uncharacterized protein; Belongs to the cyclin family.	0.985
R7TFS4_CAPTE	R7UT86_CAPTE	R7TFS4	R7UT86	Protein kinase domain-containing protein.	Uncharacterized protein.	0.721
R7TFS4_CAPTE	R7UXL5_CAPTE	R7TFS4	R7UXL5	Protein kinase domain-containing protein.	Uncharacterized protein.	0.721
R7TFS4_CAPTE	R7V163_CAPTE	R7TFS4	R7V163	Protein kinase domain-containing protein.	Uncharacterized protein.	0.675
R7TFS4_CAPTE	R7V5F0_CAPTE	R7TFS4	R7V5F0	Protein kinase domain-containing protein.	Uncharacterized protein.	0.721

page 1 of 9

Server load: low (24%) [HD]

Permalink

Network

Cooccurrence

Experiments

Coexpression

Databases

Neighborhood

Textmining

Fusion

© STRING Consortium 2025

Credits

Access

Info

About