(48 nodes) Restriction endonuclease type II-like network (Capitella teleta)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	R7TA31_CAPTE	Uncharacterized protein. (129 aa)
	R7T3X0_CAPTE	SWIM-type domain-containing protein. (815 aa)
	R7T4A6_CAPTE	YqaJ domain-containing protein. (478 aa)
	R7T5K0_CAPTE	Uncharacterized protein. (439 aa)
	R7T604_CAPTE	SWIM-type domain-containing protein. (346 aa)
	R7T6S6_CAPTE	YqaJ domain-containing protein. (106 aa)
	R7T742_CAPTE	Uncharacterized protein. (880 aa)
	R7T914_CAPTE	YqaJ domain-containing protein. (1942 aa)
	R7T9N5_CAPTE	Uncharacterized protein. (430 aa)
	R7TAX6_CAPTE	Uncharacterized protein. (394 aa)
	R7TBQ1_CAPTE	YqaJ domain-containing protein. (226 aa)
	R7TDD9_CAPTE	Uncharacterized protein. (381 aa)
	R7TDH6_CAPTE	SAP domain-containing protein. (177 aa)
	R7TDP6_CAPTE	SWIM-type domain-containing protein. (408 aa)
	R7TE52_CAPTE	YqaJ domain-containing protein. (267 aa)
	R7TEW3_CAPTE	ERCC4 domain-containing protein. (891 aa)
	R7THH3_CAPTE	PDDEXK_1 domain-containing protein. (831 aa)
	R7TI16_CAPTE	YqaJ domain-containing protein. (675 aa)
	R7TIC2_CAPTE	SWIM-type domain-containing protein. (379 aa)
	R7TJ51_CAPTE	YqaJ domain-containing protein. (244 aa)
	R7TNU6_CAPTE	Mrr_cat domain-containing protein. (352 aa)
	R7TR32_CAPTE	YqaJ domain-containing protein. (106 aa)
	R7TU91_CAPTE	Uncharacterized protein. (166 aa)
	R7TYD0_CAPTE	Uncharacterized protein. (253 aa)
	R7U0F9_CAPTE	YqaJ domain-containing protein. (596 aa)
	R7U131_CAPTE	YqaJ domain-containing protein. (186 aa)
	R7U268_CAPTE	Uncharacterized protein. (231 aa)
	R7U6F6_CAPTE	YqaJ domain-containing protein. (327 aa)
	R7UBC2_CAPTE	YqaJ domain-containing protein. (289 aa)
	R7UCC7_CAPTE	ERCC4 domain-containing protein. (609 aa)
	R7UD49_CAPTE	YqaJ domain-containing protein. (270 aa)
	R7UQ08_CAPTE	YqaJ domain-containing protein. (209 aa)
	R7UR38_CAPTE	DNA_pol_B_2 domain-containing protein. (793 aa)
	R7UUF1_CAPTE	SWIM-type domain-containing protein. (495 aa)
	R7UW18_CAPTE	YqaJ domain-containing protein. (335 aa)
	R7UX54_CAPTE	Uncharacterized protein. (221 aa)
	R7UYJ7_CAPTE	YqaJ domain-containing protein. (269 aa)
	R7V207_CAPTE	PDDEXK_1 domain-containing protein. (206 aa)
	R7V2K3_CAPTE	YqaJ domain-containing protein. (263 aa)
	R7V392_CAPTE	YqaJ domain-containing protein. (330 aa)
	R7V792_CAPTE	Uncharacterized protein. (147 aa)
	R7VCC8_CAPTE	Uncharacterized protein. (261 aa)
	R7VDN5_CAPTE	YqaJ domain-containing protein. (364 aa)
	R7VF89_CAPTE	Uncharacterized protein. (403 aa)
	R7VG77_CAPTE	YqaJ domain-containing protein. (863 aa)
	R7VHB2_CAPTE	Uncharacterized protein. (311 aa)
	R7VJX6_CAPTE	Uncharacterized protein. (176 aa)
	R7VKL1_CAPTE	Uncharacterized protein. (589 aa)

Your Current Organism:

Capitella teleta

NCBI taxonomy Id: 283909
Other names: C. teleta, Capitella sp. I, Capitella sp. I AF-2005, Capitella sp. I ECS-2004, Capitella sp. I ES-2005, Capitella sp. MKJ-2016, Capitella teleta Blake, Grassle & Eckelbarger, 2009

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
R7T604_CAPTE	R7TE52_CAPTE	R7T604	R7TE52	SWIM-type domain-containing protein.	YqaJ domain-containing protein.	0.467
R7T604_CAPTE	R7U6F6_CAPTE	R7T604	R7U6F6	SWIM-type domain-containing protein.	YqaJ domain-containing protein.	0.482
R7T604_CAPTE	R7UBC2_CAPTE	R7T604	R7UBC2	SWIM-type domain-containing protein.	YqaJ domain-containing protein.	0.466
R7T604_CAPTE	R7UD49_CAPTE	R7T604	R7UD49	SWIM-type domain-containing protein.	YqaJ domain-containing protein.	0.426
R7T604_CAPTE	R7UQ08_CAPTE	R7T604	R7UQ08	SWIM-type domain-containing protein.	YqaJ domain-containing protein.	0.472
R7T604_CAPTE	R7UW18_CAPTE	R7T604	R7UW18	SWIM-type domain-containing protein.	YqaJ domain-containing protein.	0.462
R7T604_CAPTE	R7UYJ7_CAPTE	R7T604	R7UYJ7	SWIM-type domain-containing protein.	YqaJ domain-containing protein.	0.472
R7T604_CAPTE	R7V2K3_CAPTE	R7T604	R7V2K3	SWIM-type domain-containing protein.	YqaJ domain-containing protein.	0.414
R7TDP6_CAPTE	R7U6F6_CAPTE	R7TDP6	R7U6F6	SWIM-type domain-containing protein.	YqaJ domain-containing protein.	0.443
R7TDP6_CAPTE	R7UD49_CAPTE	R7TDP6	R7UD49	SWIM-type domain-containing protein.	YqaJ domain-containing protein.	0.444
R7TDP6_CAPTE	R7UYJ7_CAPTE	R7TDP6	R7UYJ7	SWIM-type domain-containing protein.	YqaJ domain-containing protein.	0.442
R7TE52_CAPTE	R7T604_CAPTE	R7TE52	R7T604	YqaJ domain-containing protein.	SWIM-type domain-containing protein.	0.467
R7TE52_CAPTE	R7U6F6_CAPTE	R7TE52	R7U6F6	YqaJ domain-containing protein.	YqaJ domain-containing protein.	0.502
R7TE52_CAPTE	R7UD49_CAPTE	R7TE52	R7UD49	YqaJ domain-containing protein.	YqaJ domain-containing protein.	0.498
R7TE52_CAPTE	R7V392_CAPTE	R7TE52	R7V392	YqaJ domain-containing protein.	YqaJ domain-containing protein.	0.518
R7TEW3_CAPTE	R7UCC7_CAPTE	R7TEW3	R7UCC7	ERCC4 domain-containing protein.	ERCC4 domain-containing protein.	0.983
R7TEW3_CAPTE	R7VCC8_CAPTE	R7TEW3	R7VCC8	ERCC4 domain-containing protein.	Uncharacterized protein.	0.998
R7TIC2_CAPTE	R7UD49_CAPTE	R7TIC2	R7UD49	SWIM-type domain-containing protein.	YqaJ domain-containing protein.	0.401
R7U6F6_CAPTE	R7T604_CAPTE	R7U6F6	R7T604	YqaJ domain-containing protein.	SWIM-type domain-containing protein.	0.482
R7U6F6_CAPTE	R7TDP6_CAPTE	R7U6F6	R7TDP6	YqaJ domain-containing protein.	SWIM-type domain-containing protein.	0.443

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