(40 nodes) Zinc finger, PHD-type, conserved site network (Capitella teleta)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	R7U8M3_CAPTE	PHD-type domain-containing protein. (191 aa)
	R7UBC8_CAPTE	PHD domain-containing protein. (191 aa)
	R7UK30_CAPTE	Uncharacterized protein. (1129 aa)
	R7UFU4_CAPTE	PHD-type domain-containing protein. (286 aa)
	R7UDL3_CAPTE	PHD-type domain-containing protein. (251 aa)
	R7TAW8_CAPTE	Uncharacterized protein. (1448 aa)
	R7TAQ5_CAPTE	Uncharacterized protein. (1064 aa)
	R7TXR1_CAPTE	Uncharacterized protein. (164 aa)
	R7TWY4_CAPTE	PHD-type domain-containing protein. (435 aa)
	R7TW79_CAPTE	Uncharacterized protein. (189 aa)
	R7TSH2_CAPTE	Inhibitor of growth protein. (419 aa)
	R7TS14_CAPTE	Uncharacterized protein. (1490 aa)
	R7TPD8_CAPTE	Uncharacterized protein. (1325 aa)
	R7TLB8_CAPTE	Uncharacterized protein. (1564 aa)
	R7TG32_CAPTE	Uncharacterized protein. (760 aa)
	R7TEI6_CAPTE	PHD-type domain-containing protein. (61 aa)
	R7TE15_CAPTE	Uncharacterized protein. (413 aa)
	R7TDQ4_CAPTE	Uncharacterized protein. (1921 aa)
	R7VLM6_CAPTE	PHD-type domain-containing protein. (85 aa)
	R7VL49_CAPTE	PHD-type domain-containing protein. (707 aa)
	R7VGP6_CAPTE	Uncharacterized protein. (935 aa)
	R7VF16_CAPTE	PHD-type domain-containing protein. (625 aa)
	R7VA66_CAPTE	Uncharacterized protein. (236 aa)
	R7V8R2_CAPTE	PHD-type domain-containing protein. (253 aa)
	R7V4A0_CAPTE	Uncharacterized protein. (1013 aa)
	R7V407_CAPTE	Uncharacterized protein. (526 aa)
	R7V2T0_CAPTE	Uncharacterized protein. (180 aa)
	R7UZQ7_CAPTE	Inhibitor of growth protein. (289 aa)
	R7UVJ3_CAPTE	Uncharacterized protein. (872 aa)
	R7UU92_CAPTE	Uncharacterized protein. (936 aa)
	R7UTZ0_CAPTE	Uncharacterized protein. (1711 aa)
	R7URZ7_CAPTE	PHD-type domain-containing protein. (257 aa)
	R7URW8_CAPTE	Uncharacterized protein. (944 aa)
	R7UQ37_CAPTE	Uncharacterized protein. (806 aa)
	R7UNF5_CAPTE	PHD-type domain-containing protein. (250 aa)
	R7TYE1_CAPTE	PHD-type domain-containing protein. (343 aa)
	R7TZ54_CAPTE	PHD-type domain-containing protein. (388 aa)
	R7TZX7_CAPTE	Uncharacterized protein. (175 aa)
	R7U0K5_CAPTE	C2H2-type domain-containing protein. (999 aa)
	R7U2Z1_CAPTE	Uncharacterized protein. (1501 aa)

Your Current Organism:

Capitella teleta

NCBI taxonomy Id: 283909
Other names: C. teleta, Capitella sp. I, Capitella sp. I AF-2005, Capitella sp. I ECS-2004, Capitella sp. I ES-2005, Capitella sp. MKJ-2016, Capitella teleta Blake, Grassle & Eckelbarger, 2009

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
R7TAQ5_CAPTE	R7TAW8_CAPTE	R7TAQ5	R7TAW8	Uncharacterized protein.	Uncharacterized protein.	0.604
R7TAQ5_CAPTE	R7TDQ4_CAPTE	R7TAQ5	R7TDQ4	Uncharacterized protein.	Uncharacterized protein.	0.603
R7TAQ5_CAPTE	R7TE15_CAPTE	R7TAQ5	R7TE15	Uncharacterized protein.	Uncharacterized protein.	0.416
R7TAQ5_CAPTE	R7TLB8_CAPTE	R7TAQ5	R7TLB8	Uncharacterized protein.	Uncharacterized protein.	0.604
R7TAQ5_CAPTE	R7TPD8_CAPTE	R7TAQ5	R7TPD8	Uncharacterized protein.	Uncharacterized protein.	0.412
R7TAQ5_CAPTE	R7UK30_CAPTE	R7TAQ5	R7UK30	Uncharacterized protein.	Uncharacterized protein.	0.404
R7TAQ5_CAPTE	R7UQ37_CAPTE	R7TAQ5	R7UQ37	Uncharacterized protein.	Uncharacterized protein.	0.615
R7TAQ5_CAPTE	R7VA66_CAPTE	R7TAQ5	R7VA66	Uncharacterized protein.	Uncharacterized protein.	0.522
R7TAQ5_CAPTE	R7VGP6_CAPTE	R7TAQ5	R7VGP6	Uncharacterized protein.	Uncharacterized protein.	0.408
R7TAW8_CAPTE	R7TAQ5_CAPTE	R7TAW8	R7TAQ5	Uncharacterized protein.	Uncharacterized protein.	0.604
R7TAW8_CAPTE	R7U2Z1_CAPTE	R7TAW8	R7U2Z1	Uncharacterized protein.	Uncharacterized protein.	0.611
R7TAW8_CAPTE	R7UTZ0_CAPTE	R7TAW8	R7UTZ0	Uncharacterized protein.	Uncharacterized protein.	0.604
R7TAW8_CAPTE	R7VGP6_CAPTE	R7TAW8	R7VGP6	Uncharacterized protein.	Uncharacterized protein.	0.563
R7TDQ4_CAPTE	R7TAQ5_CAPTE	R7TDQ4	R7TAQ5	Uncharacterized protein.	Uncharacterized protein.	0.603
R7TDQ4_CAPTE	R7U2Z1_CAPTE	R7TDQ4	R7U2Z1	Uncharacterized protein.	Uncharacterized protein.	0.608
R7TDQ4_CAPTE	R7UTZ0_CAPTE	R7TDQ4	R7UTZ0	Uncharacterized protein.	Uncharacterized protein.	0.603
R7TDQ4_CAPTE	R7VGP6_CAPTE	R7TDQ4	R7VGP6	Uncharacterized protein.	Uncharacterized protein.	0.419
R7TE15_CAPTE	R7TAQ5_CAPTE	R7TE15	R7TAQ5	Uncharacterized protein.	Uncharacterized protein.	0.416
R7TE15_CAPTE	R7U2Z1_CAPTE	R7TE15	R7U2Z1	Uncharacterized protein.	Uncharacterized protein.	0.429
R7TE15_CAPTE	R7UTZ0_CAPTE	R7TE15	R7UTZ0	Uncharacterized protein.	Uncharacterized protein.	0.416

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