(10 nodes) Mixed, incl. Type II protein secretion system complex, and Pilus network (Idiomarina loihiensis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	mshI_1	Type II secretory pathway component. (303 aa)
	mshI_2	Type II secretory pathway component. (202 aa)
	mshJ	Type II secretory pathway component. (211 aa)
	mshL	Type II secretory pathway; PulD-like. (557 aa)
	mshM	General secretion pathway protein, ATPase. (302 aa)
	mshN	Membrane associated TPR repeats containing protein. (357 aa)
	mshE	Type II secretory pathway, ATPase; MshE-like. (571 aa)
	mshG	Type II secretory pathway; PulF-like. (412 aa)
	IL0372	Predicted Type II secretory pathway component. (149 aa)
	mshB	Pilin protein. (201 aa)

Your Current Organism:

Idiomarina loihiensis

NCBI taxonomy Id: 283942
Other names: I. loihiensis L2TR, Idiomarina loihiensis L2TR, Idiomarina loihiensis str. L2TR, Idiomarina loihiensis strain L2TR

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
IL0372	mshB	IL0372	IL0373	Predicted Type II secretory pathway component.	Pilin protein.	0.649
IL0372	mshE	IL0372	IL0370	Predicted Type II secretory pathway component.	Type II secretory pathway, ATPase; MshE-like.	0.866
IL0372	mshG	IL0372	IL0371	Predicted Type II secretory pathway component.	Type II secretory pathway; PulF-like.	0.866
IL0372	mshI_1	IL0372	IL0363	Predicted Type II secretory pathway component.	Type II secretory pathway component.	0.874
IL0372	mshI_2	IL0372	IL0364	Predicted Type II secretory pathway component.	Type II secretory pathway component.	0.880
IL0372	mshJ	IL0372	IL0365	Predicted Type II secretory pathway component.	Type II secretory pathway component.	0.858
IL0372	mshL	IL0372	IL0367	Predicted Type II secretory pathway component.	Type II secretory pathway; PulD-like.	0.858
IL0372	mshM	IL0372	IL0368	Predicted Type II secretory pathway component.	General secretion pathway protein, ATPase.	0.869
IL0372	mshN	IL0372	IL0369	Predicted Type II secretory pathway component.	Membrane associated TPR repeats containing protein.	0.779
mshB	IL0372	IL0373	IL0372	Pilin protein.	Predicted Type II secretory pathway component.	0.649
mshB	mshE	IL0373	IL0370	Pilin protein.	Type II secretory pathway, ATPase; MshE-like.	0.907
mshB	mshG	IL0373	IL0371	Pilin protein.	Type II secretory pathway; PulF-like.	0.919
mshB	mshI_1	IL0373	IL0363	Pilin protein.	Type II secretory pathway component.	0.931
mshB	mshI_2	IL0373	IL0364	Pilin protein.	Type II secretory pathway component.	0.917
mshB	mshJ	IL0373	IL0365	Pilin protein.	Type II secretory pathway component.	0.928
mshB	mshL	IL0373	IL0367	Pilin protein.	Type II secretory pathway; PulD-like.	0.930
mshB	mshM	IL0373	IL0368	Pilin protein.	General secretion pathway protein, ATPase.	0.881
mshB	mshN	IL0373	IL0369	Pilin protein.	Membrane associated TPR repeats containing protein.	0.902
mshE	IL0372	IL0370	IL0372	Type II secretory pathway, ATPase; MshE-like.	Predicted Type II secretory pathway component.	0.866
mshE	mshB	IL0370	IL0373	Type II secretory pathway, ATPase; MshE-like.	Pilin protein.	0.907