5 items (Idiomarina loihiensis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	flgJ	Flagellum-specific muramidase. (325 aa)
	flgI	Flagellar basal-body P-ring protein; Assembles around the rod to form the L-ring and probably protects the motor/basal body from shearing forces during rotation. (366 aa)
	flgH	Flagellar basal body L-ring protein; Assembles around the rod to form the L-ring and probably protects the motor/basal body from shearing forces during rotation. (224 aa)
	flgG	Flagella basal body rod protein; Belongs to the flagella basal body rod proteins family. (262 aa)
	flgF	Flagella basal body rod protein. (247 aa)

Your Current Organism:

Idiomarina loihiensis

NCBI taxonomy Id: 283942
Other names: I. loihiensis L2TR, Idiomarina loihiensis L2TR, Idiomarina loihiensis str. L2TR, Idiomarina loihiensis strain L2TR

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
flgF	flgG	IL1143	IL1142	Flagella basal body rod protein.	Flagella basal body rod protein; Belongs to the flagella basal body rod proteins family.	0.997
flgF	flgH	IL1143	IL1141	Flagella basal body rod protein.	Flagellar basal body L-ring protein; Assembles around the rod to form the L-ring and probably protects the motor/basal body from shearing forces during rotation.	0.996
flgF	flgI	IL1143	IL1140	Flagella basal body rod protein.	Flagellar basal-body P-ring protein; Assembles around the rod to form the L-ring and probably protects the motor/basal body from shearing forces during rotation.	0.995
flgF	flgJ	IL1143	IL1139	Flagella basal body rod protein.	Flagellum-specific muramidase.	0.999
flgG	flgF	IL1142	IL1143	Flagella basal body rod protein; Belongs to the flagella basal body rod proteins family.	Flagella basal body rod protein.	0.997
flgG	flgH	IL1142	IL1141	Flagella basal body rod protein; Belongs to the flagella basal body rod proteins family.	Flagellar basal body L-ring protein; Assembles around the rod to form the L-ring and probably protects the motor/basal body from shearing forces during rotation.	0.996
flgG	flgI	IL1142	IL1140	Flagella basal body rod protein; Belongs to the flagella basal body rod proteins family.	Flagellar basal-body P-ring protein; Assembles around the rod to form the L-ring and probably protects the motor/basal body from shearing forces during rotation.	0.996
flgG	flgJ	IL1142	IL1139	Flagella basal body rod protein; Belongs to the flagella basal body rod proteins family.	Flagellum-specific muramidase.	0.999
flgH	flgF	IL1141	IL1143	Flagellar basal body L-ring protein; Assembles around the rod to form the L-ring and probably protects the motor/basal body from shearing forces during rotation.	Flagella basal body rod protein.	0.996
flgH	flgG	IL1141	IL1142	Flagellar basal body L-ring protein; Assembles around the rod to form the L-ring and probably protects the motor/basal body from shearing forces during rotation.	Flagella basal body rod protein; Belongs to the flagella basal body rod proteins family.	0.996
flgH	flgI	IL1141	IL1140	Flagellar basal body L-ring protein; Assembles around the rod to form the L-ring and probably protects the motor/basal body from shearing forces during rotation.	Flagellar basal-body P-ring protein; Assembles around the rod to form the L-ring and probably protects the motor/basal body from shearing forces during rotation.	0.999
flgH	flgJ	IL1141	IL1139	Flagellar basal body L-ring protein; Assembles around the rod to form the L-ring and probably protects the motor/basal body from shearing forces during rotation.	Flagellum-specific muramidase.	0.999
flgI	flgF	IL1140	IL1143	Flagellar basal-body P-ring protein; Assembles around the rod to form the L-ring and probably protects the motor/basal body from shearing forces during rotation.	Flagella basal body rod protein.	0.995
flgI	flgG	IL1140	IL1142	Flagellar basal-body P-ring protein; Assembles around the rod to form the L-ring and probably protects the motor/basal body from shearing forces during rotation.	Flagella basal body rod protein; Belongs to the flagella basal body rod proteins family.	0.996
flgI	flgH	IL1140	IL1141	Flagellar basal-body P-ring protein; Assembles around the rod to form the L-ring and probably protects the motor/basal body from shearing forces during rotation.	Flagellar basal body L-ring protein; Assembles around the rod to form the L-ring and probably protects the motor/basal body from shearing forces during rotation.	0.999
flgI	flgJ	IL1140	IL1139	Flagellar basal-body P-ring protein; Assembles around the rod to form the L-ring and probably protects the motor/basal body from shearing forces during rotation.	Flagellum-specific muramidase.	0.999
flgJ	flgF	IL1139	IL1143	Flagellum-specific muramidase.	Flagella basal body rod protein.	0.999
flgJ	flgG	IL1139	IL1142	Flagellum-specific muramidase.	Flagella basal body rod protein; Belongs to the flagella basal body rod proteins family.	0.999
flgJ	flgH	IL1139	IL1141	Flagellum-specific muramidase.	Flagellar basal body L-ring protein; Assembles around the rod to form the L-ring and probably protects the motor/basal body from shearing forces during rotation.	0.999
flgJ	flgI	IL1139	IL1140	Flagellum-specific muramidase.	Flagellar basal-body P-ring protein; Assembles around the rod to form the L-ring and probably protects the motor/basal body from shearing forces during rotation.	0.999