(36 nodes) Mixed, incl. Glycoside transport, and ABC-2 family transporter protein network (Haloarcula vallismortis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	SDW08476.1	Transcriptional regulator, AsnC family. (345 aa)
	SDW13454.1	Radical SAM additional 4Fe4S-binding SPASM domain-containing protein. (357 aa)
	SDW02221.1	ABC-2 type transport system permease protein. (334 aa)
	SDW02237.1	ABC-2 type transport system ATP-binding protein. (312 aa)
	SDW24526.1	Nitric oxide reductase, NorZ apoprotein. (760 aa)
	SDW39051.1	Hypothetical protein. (139 aa)
	SDW39072.1	Hypothetical protein. (133 aa)
	SDW39098.1	ABC-2 type transport system ATP-binding protein. (314 aa)
	SDW39133.1	ABC-2 type transport system permease protein. (255 aa)
	SDW56499.1	ATP-binding cassette, subfamily B, MsbA. (602 aa)
	SDW63414.1	Transcriptional regulator, AsnC family. (351 aa)
	SDW62194.1	Amino acid/polyamine/organocation transporter, APC superfamily. (734 aa)
	SDW62220.1	TrkA-N domain-containing protein. (154 aa)
	SDW62247.1	Transcriptional regulator, AsnC family. (163 aa)
	SDW62265.1	Hypothetical protein. (190 aa)
	SDW62292.1	ABC-2 type transport system ATP-binding protein. (249 aa)
	SDW62314.1	ABC-2 family transporter protein. (299 aa)
	SDW70886.1	Hypothetical protein. (233 aa)
	SDW70911.1	Selenoprotein W-related protein. (79 aa)
	SDW70938.1	Hypothetical protein. (35 aa)
	SDW70967.1	ABC-2 type transport system ATP-binding protein. (313 aa)
	SDW70986.1	ABC-2 type transport system permease protein. (246 aa)
	SDX06814.1	Parallel beta-helix repeat (two copies). (637 aa)
	SDX06829.1	ABC-type multidrug transport system, ATPase component. (241 aa)
	SDX06849.1	ABC-type transport system involved in multi-copper enzyme maturation, permease component. (270 aa)
	SDX09825.1	ABC-2 type transport system ATP-binding protein/heme exporter protein A. (232 aa)
	SDX09933.1	pseudo-rSAM protein/SPASM domain protein. (411 aa)
	SDX15777.1	ABC-2 type transport system ATP-binding protein. (248 aa)
	SDX25319.1	Hypothetical protein. (241 aa)
	SDX25341.1	Plastocyanin. (169 aa)
	SDX25370.1	Nitrous oxide reductase apoprotein. (659 aa)
	SDX25389.1	Hypothetical protein. (266 aa)
	SDX25410.1	Nitrous oxidase accessory protein. (463 aa)
	SDX25434.1	Cu-processing system ATP-binding protein. (327 aa)
	SDX25453.1	Cu-processing system permease protein. (314 aa)
	SDX30652.1	ABC-2 type transport system permease protein. (279 aa)

Your Current Organism:

Haloarcula vallismortis

NCBI taxonomy Id: 28442
Other names: ATCC 29715, CGMCC 1.2048, DSM 3756, H. vallismortis, Halobacterium vallismortis, IFO 14741, JCM 8877, NBRC 14741, strain J. F. 54

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SDW02221.1	SDW02237.1	SAMN05443574_10167	SAMN05443574_10168	ABC-2 type transport system permease protein.	ABC-2 type transport system ATP-binding protein.	0.953
SDW02221.1	SDW08476.1	SAMN05443574_10167	SAMN05443574_101302	ABC-2 type transport system permease protein.	Transcriptional regulator, AsnC family.	0.450
SDW02221.1	SDW39098.1	SAMN05443574_10167	SAMN05443574_10364	ABC-2 type transport system permease protein.	ABC-2 type transport system ATP-binding protein.	0.689
SDW02221.1	SDW62292.1	SAMN05443574_10167	SAMN05443574_10580	ABC-2 type transport system permease protein.	ABC-2 type transport system ATP-binding protein.	0.779
SDW02221.1	SDW63414.1	SAMN05443574_10167	SAMN05443574_105132	ABC-2 type transport system permease protein.	Transcriptional regulator, AsnC family.	0.429
SDW02221.1	SDW70967.1	SAMN05443574_10167	SAMN05443574_1066	ABC-2 type transport system permease protein.	ABC-2 type transport system ATP-binding protein.	0.689
SDW02221.1	SDX06814.1	SAMN05443574_10167	SAMN05443574_11356	ABC-2 type transport system permease protein.	Parallel beta-helix repeat (two copies).	0.905
SDW02221.1	SDX06829.1	SAMN05443574_10167	SAMN05443574_11357	ABC-2 type transport system permease protein.	ABC-type multidrug transport system, ATPase component.	0.823
SDW02221.1	SDX06849.1	SAMN05443574_10167	SAMN05443574_11358	ABC-2 type transport system permease protein.	ABC-type transport system involved in multi-copper enzyme maturation, permease component.	0.781
SDW02221.1	SDX09825.1	SAMN05443574_10167	SAMN05443574_11460	ABC-2 type transport system permease protein.	ABC-2 type transport system ATP-binding protein/heme exporter protein A.	0.748
SDW02221.1	SDX15777.1	SAMN05443574_10167	SAMN05443574_11633	ABC-2 type transport system permease protein.	ABC-2 type transport system ATP-binding protein.	0.689
SDW02221.1	SDX25370.1	SAMN05443574_10167	SAMN05443574_12214	ABC-2 type transport system permease protein.	Nitrous oxide reductase apoprotein.	0.917
SDW02221.1	SDX25389.1	SAMN05443574_10167	SAMN05443574_12215	ABC-2 type transport system permease protein.	Hypothetical protein.	0.408
SDW02221.1	SDX25410.1	SAMN05443574_10167	SAMN05443574_12216	ABC-2 type transport system permease protein.	Nitrous oxidase accessory protein.	0.905
SDW02221.1	SDX25434.1	SAMN05443574_10167	SAMN05443574_12217	ABC-2 type transport system permease protein.	Cu-processing system ATP-binding protein.	0.864
SDW02237.1	SDW02221.1	SAMN05443574_10168	SAMN05443574_10167	ABC-2 type transport system ATP-binding protein.	ABC-2 type transport system permease protein.	0.953
SDW02237.1	SDW39133.1	SAMN05443574_10168	SAMN05443574_10365	ABC-2 type transport system ATP-binding protein.	ABC-2 type transport system permease protein.	0.608
SDW02237.1	SDW56499.1	SAMN05443574_10168	SAMN05443574_104264	ABC-2 type transport system ATP-binding protein.	ATP-binding cassette, subfamily B, MsbA.	0.432
SDW02237.1	SDW62314.1	SAMN05443574_10168	SAMN05443574_10581	ABC-2 type transport system ATP-binding protein.	ABC-2 family transporter protein.	0.689
SDW02237.1	SDW70986.1	SAMN05443574_10168	SAMN05443574_1067	ABC-2 type transport system ATP-binding protein.	ABC-2 type transport system permease protein.	0.566

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