Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| SDW06172.1 | SDW28885.1 | SAMN05443574_101223 | SAMN05443574_102285 | Undecaprenyl-diphosphatase. | dITPase. | 0.442 |
| SDW06172.1 | SDW42837.1 | SAMN05443574_101223 | SAMN05443574_103192 | Undecaprenyl-diphosphatase. | PAP2 superfamily protein. | 0.731 |
| SDW06172.1 | SDW77697.1 | SAMN05443574_101223 | SAMN05443574_106251 | Undecaprenyl-diphosphatase. | Putative membrane protein. | 0.595 |
| SDW21407.1 | SDW55720.1 | SAMN05443574_10210 | SAMN05443574_104233 | dUTP pyrophosphatase. | 8-oxo-dGTP pyrophosphatase MutT, NUDIX family. | 0.480 |
| SDW26901.1 | SDW82327.1 | SAMN05443574_102201 | SAMN05443574_107100 | Nucleolar GTP-binding protein. | Membrane protease FtsH catalytic subunit; Belongs to the AAA ATPase family. | 0.473 |
| SDW26901.1 | SDX08691.1 | SAMN05443574_102201 | SAMN05443574_1148 | Nucleolar GTP-binding protein. | Hypothetical protein. | 0.575 |
| SDW26901.1 | eif2g | SAMN05443574_102201 | SAMN05443574_107107 | Nucleolar GTP-binding protein. | Translation initiation factor 2 subunit gamma (aeIF-2g); eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA. Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EIF2G subfamily. | 0.577 |
| SDW26901.1 | fusA | SAMN05443574_102201 | SAMN05443574_102212 | Nucleolar GTP-binding protein. | Translation elongation factor 2 (EF-2/EF-G); Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. [...] | 0.579 |
| SDW26901.1 | guaAB | SAMN05443574_102201 | SAMN05443574_101451 | Nucleolar GTP-binding protein. | GMP synthase (glutamine-hydrolyzing); Catalyzes the synthesis of GMP from XMP. | 0.730 |
| SDW26901.1 | infB | SAMN05443574_102201 | SAMN05443574_101208 | Nucleolar GTP-binding protein. | Translation initiation factor eaIF-5B; Function in general translation initiation by promoting the binding of the formylmethionine-tRNA to ribosomes. Seems to function along with eIF-2. | 0.407 |
| SDW28885.1 | SDW06172.1 | SAMN05443574_102285 | SAMN05443574_101223 | dITPase. | Undecaprenyl-diphosphatase. | 0.442 |
| SDW28885.1 | SDW55720.1 | SAMN05443574_102285 | SAMN05443574_104233 | dITPase. | 8-oxo-dGTP pyrophosphatase MutT, NUDIX family. | 0.613 |
| SDW28885.1 | SDW66761.1 | SAMN05443574_102285 | SAMN05443574_105263 | dITPase. | 8-oxo-dGTP pyrophosphatase MutT, NUDIX family. | 0.405 |
| SDW28885.1 | SDW67382.1 | SAMN05443574_102285 | SAMN05443574_105287 | dITPase. | GTP-binding conserved hypothetical protein TIGR00650. | 0.492 |
| SDW28885.1 | SDW76729.1 | SAMN05443574_102285 | SAMN05443574_106216 | dITPase. | GTP-binding conserved hypothetical protein TIGR00650. | 0.562 |
| SDW28885.1 | SDX07061.1 | SAMN05443574_102285 | SAMN05443574_11368 | dITPase. | Ca2+-transporting ATPase. | 0.592 |
| SDW28885.1 | guaAB | SAMN05443574_102285 | SAMN05443574_101451 | dITPase. | GMP synthase (glutamine-hydrolyzing); Catalyzes the synthesis of GMP from XMP. | 0.967 |
| SDW28885.1 | infB | SAMN05443574_102285 | SAMN05443574_101208 | dITPase. | Translation initiation factor eaIF-5B; Function in general translation initiation by promoting the binding of the formylmethionine-tRNA to ribosomes. Seems to function along with eIF-2. | 0.550 |
| SDW28885.1 | uvrB | SAMN05443574_102285 | SAMN05443574_10122 | dITPase. | Excinuclease ABC subunit B; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. Upon binding of the UvrA(2)B(2) complex to a putative damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate [...] | 0.459 |
| SDW40806.1 | infB | SAMN05443574_103121 | SAMN05443574_101208 | Transitional endoplasmic reticulum ATPase. | Translation initiation factor eaIF-5B; Function in general translation initiation by promoting the binding of the formylmethionine-tRNA to ribosomes. Seems to function along with eIF-2. | 0.428 |
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