21 items (Kluyveromyces lactis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	KLLA0_D17160g	Small nuclear ribonucleoprotein Sm D3. (100 aa)
	KLLA0_D09284g	Small nuclear ribonucleoprotein Sm D2. (110 aa)
	KLLA0_D07678g	Small nuclear ribonucleoprotein G. (73 aa)
	SNU71	U1 small nuclear ribonucleoprotein component SNU71; Component of the U1 snRNP particle, which recognizes and binds the 5'-splice site of pre-mRNA. Together with other non-snRNP factors, U1 snRNP forms the spliceosomal commitment complex, that targets pre-mRNA to the splicing pathway (By similarity). (568 aa)
	KLLA0_C15169g	KLLA0C15169p. (549 aa)
	KLLA0_C14388g	KLLA0C14388p. (203 aa)
	KLLA0_C08019g	KLLA0C08019p. (301 aa)
	KLLA0_B11594g	KLLA0B11594p. (114 aa)
	KLLA0_B08976g	KLLA0B08976p. (305 aa)
	KLLA0_B02156g	KLLA0B02156p. (242 aa)
	KLLA0_B00627g	KLLA0B00627p. (191 aa)
	KLLA0_A09537g	KLLA0A09537p. (954 aa)
	RSE1	Pre-mRNA-splicing factor RSE1; Involved in pre-mRNA splicing and cell cycle control. (1269 aa)
	KLLA0_A08019g	KLLA0A08019p. (615 aa)
	KLLA0_A02299g	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (93 aa)
	KLLA0_F24662g	KLLA0F24662p. (530 aa)
	KLLA0_F22473g	KLLA0F22473p. (253 aa)
	CLF1	Pre-mRNA-splicing factor CLF1; Involved in pre-mRNA splicing and cell cycle progression. Required for the spliceosome assembly and initiation of the DNA replication (By similarity). (684 aa)
	KLLA0_F14861g	KLLA0F14861p. (589 aa)
	KLLA0_F07249g	KLLA0F07249p. (256 aa)
	KLLA0_E18239g	KLLA0E18239p. (571 aa)

Your Current Organism:

Kluyveromyces lactis

NCBI taxonomy Id: 284590
Other names: K. lactis NRRL Y-1140, Kluyveromyces lactis NRRL Y-1140

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CLF1	KLLA0_A02299g	Q6CJK2	Q6CY87	Pre-mRNA-splicing factor CLF1; Involved in pre-mRNA splicing and cell cycle progression. Required for the spliceosome assembly and initiation of the DNA replication (By similarity).	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	0.991
CLF1	KLLA0_A08019g	Q6CJK2	Q6CXI2	Pre-mRNA-splicing factor CLF1; Involved in pre-mRNA splicing and cell cycle progression. Required for the spliceosome assembly and initiation of the DNA replication (By similarity).	KLLA0A08019p.	0.400
CLF1	KLLA0_A09537g	Q6CJK2	Q6CXC2	Pre-mRNA-splicing factor CLF1; Involved in pre-mRNA splicing and cell cycle progression. Required for the spliceosome assembly and initiation of the DNA replication (By similarity).	KLLA0A09537p.	0.993
CLF1	KLLA0_B00627g	Q6CJK2	Q6CWY1	Pre-mRNA-splicing factor CLF1; Involved in pre-mRNA splicing and cell cycle progression. Required for the spliceosome assembly and initiation of the DNA replication (By similarity).	KLLA0B00627p.	0.990
CLF1	KLLA0_B02156g	Q6CJK2	Q6CWR2	Pre-mRNA-splicing factor CLF1; Involved in pre-mRNA splicing and cell cycle progression. Required for the spliceosome assembly and initiation of the DNA replication (By similarity).	KLLA0B02156p.	0.991
CLF1	KLLA0_B08976g	Q6CJK2	Q6CVW1	Pre-mRNA-splicing factor CLF1; Involved in pre-mRNA splicing and cell cycle progression. Required for the spliceosome assembly and initiation of the DNA replication (By similarity).	KLLA0B08976p.	0.550
CLF1	KLLA0_B11594g	Q6CJK2	Q6CVJ3	Pre-mRNA-splicing factor CLF1; Involved in pre-mRNA splicing and cell cycle progression. Required for the spliceosome assembly and initiation of the DNA replication (By similarity).	KLLA0B11594p.	0.938
CLF1	KLLA0_C08019g	Q6CJK2	Q6CU32	Pre-mRNA-splicing factor CLF1; Involved in pre-mRNA splicing and cell cycle progression. Required for the spliceosome assembly and initiation of the DNA replication (By similarity).	KLLA0C08019p.	0.482
CLF1	KLLA0_C14388g	Q6CJK2	Q6CT95	Pre-mRNA-splicing factor CLF1; Involved in pre-mRNA splicing and cell cycle progression. Required for the spliceosome assembly and initiation of the DNA replication (By similarity).	KLLA0C14388p.	0.866
CLF1	KLLA0_D07678g	Q6CJK2	Q6CRN4	Pre-mRNA-splicing factor CLF1; Involved in pre-mRNA splicing and cell cycle progression. Required for the spliceosome assembly and initiation of the DNA replication (By similarity).	Small nuclear ribonucleoprotein G.	0.982
CLF1	KLLA0_D09284g	Q6CJK2	Q6CRG3	Pre-mRNA-splicing factor CLF1; Involved in pre-mRNA splicing and cell cycle progression. Required for the spliceosome assembly and initiation of the DNA replication (By similarity).	Small nuclear ribonucleoprotein Sm D2.	0.991
CLF1	KLLA0_D17160g	Q6CJK2	Q6CQH0	Pre-mRNA-splicing factor CLF1; Involved in pre-mRNA splicing and cell cycle progression. Required for the spliceosome assembly and initiation of the DNA replication (By similarity).	Small nuclear ribonucleoprotein Sm D3.	0.984
CLF1	KLLA0_E18239g	Q6CJK2	Q6CMR6	Pre-mRNA-splicing factor CLF1; Involved in pre-mRNA splicing and cell cycle progression. Required for the spliceosome assembly and initiation of the DNA replication (By similarity).	KLLA0E18239p.	0.505
CLF1	KLLA0_F07249g	Q6CJK2	Q6CKY0	Pre-mRNA-splicing factor CLF1; Involved in pre-mRNA splicing and cell cycle progression. Required for the spliceosome assembly and initiation of the DNA replication (By similarity).	KLLA0F07249p.	0.436
CLF1	KLLA0_F14861g	Q6CJK2	Q6CJZ1	Pre-mRNA-splicing factor CLF1; Involved in pre-mRNA splicing and cell cycle progression. Required for the spliceosome assembly and initiation of the DNA replication (By similarity).	KLLA0F14861p.	0.550
CLF1	KLLA0_F22473g	Q6CJK2	Q6CJ05	Pre-mRNA-splicing factor CLF1; Involved in pre-mRNA splicing and cell cycle progression. Required for the spliceosome assembly and initiation of the DNA replication (By similarity).	KLLA0F22473p.	0.882
CLF1	KLLA0_F24662g	Q6CJK2	Q6CIR1	Pre-mRNA-splicing factor CLF1; Involved in pre-mRNA splicing and cell cycle progression. Required for the spliceosome assembly and initiation of the DNA replication (By similarity).	KLLA0F24662p.	0.895
CLF1	RSE1	Q6CJK2	Q6CXH8	Pre-mRNA-splicing factor CLF1; Involved in pre-mRNA splicing and cell cycle progression. Required for the spliceosome assembly and initiation of the DNA replication (By similarity).	Pre-mRNA-splicing factor RSE1; Involved in pre-mRNA splicing and cell cycle control.	0.993
KLLA0_A02299g	CLF1	Q6CY87	Q6CJK2	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	Pre-mRNA-splicing factor CLF1; Involved in pre-mRNA splicing and cell cycle progression. Required for the spliceosome assembly and initiation of the DNA replication (By similarity).	0.991
KLLA0_A02299g	KLLA0_A08019g	Q6CY87	Q6CXI2	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	KLLA0A08019p.	0.627