STRINGSTRING
LSM1 LSM1 KLLA0_A02299g KLLA0_A02299g KLLA0_A11220g KLLA0_A11220g KLLA0_B00627g KLLA0_B00627g KLLA0_B05203g KLLA0_B05203g KLLA0_D03773g KLLA0_D03773g KLLA0_D07678g KLLA0_D07678g KLLA0_D09284g KLLA0_D09284g KLLA0_D17160g KLLA0_D17160g LSM6 LSM6 KLLA0_E04929g KLLA0_E04929g KLLA0_E10209g KLLA0_E10209g KLLA0_E16457g KLLA0_E16457g KLLA0_E22881g KLLA0_E22881g KLLA0_F09207g KLLA0_F09207g LSM4 LSM4
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
LSM1U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation. (179 aa)
KLLA0_A02299gSmall nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (93 aa)
KLLA0_A11220gKLLA0A11220p. (91 aa)
KLLA0_B00627gKLLA0B00627p. (191 aa)
KLLA0_B05203gKLLA0B05203p. (83 aa)
KLLA0_D03773gKLLA0D03773p. (141 aa)
KLLA0_D07678gSmall nuclear ribonucleoprotein G. (73 aa)
KLLA0_D09284gSmall nuclear ribonucleoprotein Sm D2. (110 aa)
KLLA0_D17160gSmall nuclear ribonucleoprotein Sm D3. (100 aa)
LSM6U6 snRNA-associated Sm-like protein LSm6; Component of LSm protein complexes, which are involved in RNA processing and may function in a chaperone-like manner, facilitating the efficient association of RNA processing factors with their substrates. Component of the cytoplasmic LSM1-LSM7 complex, which is thought to be involved in mRNA degradation by activating the decapping step in the 5'-to-3' mRNA decay pathway. Component of the nuclear LSM2- LSM8 complex, which is involved in splicing of nuclear mRNAs. LSM2-LSM8 associates with multiple snRNP complexes containing the U6 snRNA (U4/U6 [...] (80 aa)
KLLA0_E04929gKLLA0E04929p. (112 aa)
KLLA0_E10209gKLLA0E10209p. (84 aa)
KLLA0_E16457gKLLA0E16457p. (96 aa)
KLLA0_E22881gKLLA0E22881p. (110 aa)
KLLA0_F09207gU6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (95 aa)
LSM4U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (183 aa)
Your Current Organism:
Kluyveromyces lactis
NCBI taxonomy Id: 284590
Other names: K. lactis NRRL Y-1140, Kluyveromyces lactis NRRL Y-1140
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