STRINGSTRING
AGOS_AFR182C AGOS_AFR182C AGOS_AFR059W AGOS_AFR059W AGOS_AER206C AGOS_AER206C AGOS_AER205W AGOS_AER205W LSM3 LSM3 SNU13 SNU13 AGOS_ADR032W AGOS_ADR032W AGOS_ADR017W AGOS_ADR017W AGOS_AAR116W AGOS_AAR116W LSM8 LSM8 AGOS_ABR103C AGOS_ABR103C AGOS_AGL157C AGOS_AGL157C AGOS_AFR539C AGOS_AFR539C AGOS_AFR511C AGOS_AFR511C AGOS_AGR277W AGOS_AGR277W
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
AGOS_AFR182CU6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (95 aa)
AGOS_AFR059WSplicing factor subunit; Belongs to the SF3B5 family. (84 aa)
AGOS_AER206CAER206Cp. (232 aa)
AGOS_AER205WAER205Wp. (144 aa)
LSM3U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (83 aa)
SNU1313 kDa ribonucleoprotein-associated protein; Common component of the spliceosome and rRNA processing machinery. In association with the spliceosomal U4/U6.U5 tri-snRNP particle, required for splicing of pre-mRNA. In association with box C/D snoRNPs, required for processing of pre-ribosomal RNA (rRNA) and site-specific 2'-O-methylation of substrate RNAs. Essential for the accumulation and stability of U4 snRNA, U6 snRNA, and box C/D snoRNAs (By similarity). (127 aa)
AGOS_ADR032WADR032Wp. (371 aa)
AGOS_ADR017WADR017Wp. (173 aa)
AGOS_AAR116WSmall nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (97 aa)
LSM8U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA. (106 aa)
AGOS_ABR103CABR103Cp. (107 aa)
AGOS_AGL157CSmall nuclear ribonucleoprotein Sm D3. (102 aa)
AGOS_AFR539CAFR539Cp. (423 aa)
AGOS_AFR511CSmall nuclear ribonucleoprotein G. (76 aa)
AGOS_AGR277WSmall nuclear ribonucleoprotein Sm D2. (108 aa)
Your Current Organism:
Eremothecium gossypii
NCBI taxonomy Id: 284811
Other names: Ashbya gossypii ATCC 10895, E. gossypii ATCC 10895, Eremothecium gossypii ATCC 10895
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