23 items (Eremothecium gossypii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AGOS_AAL163W	AAL163Wp. (199 aa)
	AGOS_AGR221W	AGR221Wp; Belongs to the small GTPase superfamily. Arf family. (183 aa)
	AGOS_AGR147W	AGR147Wp. (766 aa)
	AGOS_AGL261W	AGL261Wp. (198 aa)
	AGOS_AFR375W	AFR375Wp. (189 aa)
	AGOS_AFL168W	AFL168Wp. (215 aa)
	AGOS_AER438C	AER438Cp. (348 aa)
	AGOS_AER169C	AER169Cp. (762 aa)
	AGOS_AER147W	AER147Wp. (479 aa)
	AGOS_AEL026C	AEL026Cp; Belongs to the syntaxin family. (349 aa)
	AGOS_AEL328W	AEL328Wp. (829 aa)
	AGOS_ADR355C	ADR355Cp. (109 aa)
	AGOS_ADR241C	ADR241Cp. (993 aa)
	AGOS_ADR112W	ADR112Wp. (577 aa)
	AGOS_ADL149W	ADL149Wp. (1211 aa)
	COG6	Conserved oligomeric Golgi complex subunit 6; Acts as component of the peripheral membrane COG complex that is involved in intra-Golgi protein trafficking. COG is located at the cis-Golgi, and regulates tethering of retrograde intra-Golgi vesicles and possibly a number of other membrane trafficking events (By similarity); Belongs to the COG6 family. (806 aa)
	AGOS_ADL308C	ADL308Cp. (173 aa)
	AGOS_ACR275W	ACR275Wp. (263 aa)
	AGOS_ACR044C	ACR044Cp. (798 aa)
	SEC17	Vesicular-fusion protein SEC17; Required for vesicular transport between the endoplasmic reticulum and the Golgi apparatus; Belongs to the SNAP family. (291 aa)
	AGOS_ABL093W	ABL093Wp. (944 aa)
	AGOS_AAR133W	AAR133Wp. (763 aa)
	AGOS_AGR257C	AGR257Cp. (220 aa)

Your Current Organism:

Eremothecium gossypii

NCBI taxonomy Id: 284811
Other names: Ashbya gossypii ATCC 10895, E. gossypii ATCC 10895, Eremothecium gossypii ATCC 10895

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AGOS_AAL163W	AGOS_AGL261W	Q75F94	Q751G7	AAL163Wp.	AGL261Wp.	0.796
AGOS_AAL163W	AGOS_AGR221W	Q75F94	Q74ZI1	AAL163Wp.	AGR221Wp; Belongs to the small GTPase superfamily. Arf family.	0.567
AGOS_AAL163W	AGOS_AGR257C	Q75F94	Q74ZE2	AAL163Wp.	AGR257Cp.	0.429
AGOS_AAL163W	COG6	Q75F94	Q75AZ8	AAL163Wp.	Conserved oligomeric Golgi complex subunit 6; Acts as component of the peripheral membrane COG complex that is involved in intra-Golgi protein trafficking. COG is located at the cis-Golgi, and regulates tethering of retrograde intra-Golgi vesicles and possibly a number of other membrane trafficking events (By similarity); Belongs to the COG6 family.	0.464
AGOS_AAR133W	AGOS_ADL308C	Q75EE8	Q75B80	AAR133Wp.	ADL308Cp.	0.998
AGOS_ABL093W	AGOS_ACR044C	Q75DW6	Q75C72	ABL093Wp.	ACR044Cp.	0.999
AGOS_ABL093W	AGOS_ACR275W	Q75DW6	Q75BJ6	ABL093Wp.	ACR275Wp.	0.649
AGOS_ABL093W	AGOS_ADR112W	Q75DW6	Q75A02	ABL093Wp.	ADR112Wp.	0.998
AGOS_ABL093W	AGOS_ADR241C	Q75DW6	Q759N4	ABL093Wp.	ADR241Cp.	0.628
AGOS_ABL093W	AGOS_ADR355C	Q75DW6	Q759C2	ABL093Wp.	ADR355Cp.	0.634
AGOS_ABL093W	AGOS_AEL026C	Q75DW6	Q757N8	ABL093Wp.	AEL026Cp; Belongs to the syntaxin family.	0.868
AGOS_ABL093W	AGOS_AEL328W	Q75DW6	Q758T0	ABL093Wp.	AEL328Wp.	0.846
AGOS_ABL093W	AGOS_AER147W	Q75DW6	Q756V4	ABL093Wp.	AER147Wp.	0.845
AGOS_ABL093W	AGOS_AER169C	Q75DW6	Q756T4	ABL093Wp.	AER169Cp.	0.698
AGOS_ABL093W	AGOS_AER438C	Q75DW6	Q755T0	ABL093Wp.	AER438Cp.	0.649
AGOS_ABL093W	AGOS_AFL168W	Q75DW6	Q755J1	ABL093Wp.	AFL168Wp.	0.705
AGOS_ABL093W	AGOS_AFR375W	Q75DW6	Q753E1	ABL093Wp.	AFR375Wp.	0.827
AGOS_ABL093W	AGOS_AGL261W	Q75DW6	Q751G7	ABL093Wp.	AGL261Wp.	0.631
AGOS_ABL093W	AGOS_AGR147W	Q75DW6	Q74ZQ1	ABL093Wp.	AGR147Wp.	0.841
AGOS_ABL093W	AGOS_AGR221W	Q75DW6	Q74ZI1	ABL093Wp.	AGR221Wp; Belongs to the small GTPase superfamily. Arf family.	0.620