(46 nodes) Organellar ribosome network (Schizosaccharomyces pombe)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	mrps28	Probable 37S ribosomal protein S28, mitochondrial; Essential component of the small mitochondrial ribosomal subunit; Belongs to the universal ribosomal protein uS15 family. (288 aa)
	rsm7	37S ribosomal protein S7, mitochondrial. (259 aa)
	mrps18	Putative 37S ribosomal protein S18, mitochondrial; Belongs to the universal ribosomal protein uS11 family. (223 aa)
	mrp4	37S ribosomal protein mrp4, mitochondrial; Belongs to the universal ribosomal protein uS2 family. (263 aa)
	mrps9	37S ribosomal protein S9, mitochondrial. (271 aa)
	mrpl28	54S ribosomal protein L28, mitochondrial; Involved in mitochondrial genome encoded proteins translation. (118 aa)
	mrps12	Probable 37S ribosomal protein S12, mitochondrial. (162 aa)
	mrpl7	Probable 54S ribosomal protein L7, mitochondrial. (287 aa)
	mrp2	Probable 37S ribosomal protein mrp2, mitochondrial. (105 aa)
	mrps16	Probable 37S ribosomal protein S16, mitochondrial. (96 aa)
	mrpl3	54S ribosomal protein L3, mitochondrial; Belongs to the ribonuclease III family. Mitochondrion- specific ribosomal protein mL44 subfamily. (326 aa)
	rsm23	37S ribosomal protein S23, mitochondrial; Required for maintenance of mitochondrial DNA. (476 aa)
	mrpl33	Probable 54S ribosomal protein L33, mitochondrial. (97 aa)
	mrpl24	54S ribosomal protein L24, mitochondrial. (176 aa)
	mrpl23	54S ribosomal protein L23, mitochondrial; Belongs to the universal ribosomal protein uL13 family. (157 aa)
	rsm10	37S ribosomal protein S10, mitochondrial; Involved in mitochondrial genome encoded proteins translation. Involved in the binding of tRNA to the ribosomes (By similarity). (228 aa)
	mrpl39	54S ribosomal protein L39, mitochondrial. (55 aa)
	mrpl22	54S ribosomal protein L22, mitochondrial. (249 aa)
	yml6	54S ribosomal protein yml6, mitochondrial; Belongs to the universal ribosomal protein uL4 family. (261 aa)
	mrpl8	54S ribosomal protein L8, mitochondrial; Belongs to the bacterial ribosomal protein bL17 family. (207 aa)
	mrpl32	Probable 54S ribosomal protein L32, mitochondrial; Component of the large subunit of mitochondrial ribosome. Belongs to the bacterial ribosomal protein bL32 family. (103 aa)
	mrpl17	54S ribosomal protein L17, mitochondrial; Belongs to the mitochondrion-specific ribosomal protein mL46 family. (268 aa)
	rtc6	54S ribosomal protein c83.06c, mitochondrial; Belongs to the bacterial ribosomal protein bL36 family. (92 aa)
	mrpl4	54S ribosomal protein L4, mitochondrial; Belongs to the universal ribosomal protein uL29 family. (144 aa)
	rsm24	37S ribosomal protein S24, mitochondrial; Involved in mitochondrial genome encoded proteins translation. (258 aa)
	mrp20	54S ribosomal protein L23, mitochondrial; Involved in mitochondrial genome encoded proteins translation. (161 aa)
	mrpl6	Putative 54S ribosomal protein L6, mitochondrial. (213 aa)
	img2	54S ribosomal protein img2, mitochondrial; Belongs to the mitochondrion-specific ribosomal protein mL49 family. (105 aa)
	mrp5	Probable 37S ribosomal protein S5, mitochondrial. (387 aa)
	mrpl27	54S ribosomal protein L27, mitochondrial; Belongs to the mitochondrion-specific ribosomal protein mL41 family. (93 aa)
	mrp7	54S ribosomal protein L27, mitochondrial; Involved in mitochondrial genome encoded proteins translation. (153 aa)
	mrpl9	54S ribosomal protein L9, mitochondrial; Belongs to the universal ribosomal protein uL3 family. (259 aa)
	mrx14	Probable 54S ribosomal protein L34, mitochondrial. (108 aa)
	SPCC777.17c	Probable 54S ribosomal protein L9, mitochondrial. (101 aa)
	rsm19	Probable ribosomal protein S19, mitochondrial. (93 aa)
	mrpl12	54S ribosomal protein L12, mitochondrial; Belongs to the bacterial ribosomal protein bL12 family. (173 aa)
	rsm18	37S ribosomal protein rsm18, mitochondrial; Belongs to the bacterial ribosomal protein bS18 family. (166 aa)
	mrp17	37S ribosomal protein MRP17, mitochondrial; Belongs to the bacterial ribosomal protein bS6 family. (111 aa)
	img1	54S ribosomal protein subunit img1, mitochondrial. (182 aa)
	mrpl19	54S ribosomal protein L19, mitochondrial; Belongs to the universal ribosomal protein uL11 family. (144 aa)
	mrps17	37S ribosomal protein S17, mitochondrial; Belongs to the universal ribosomal protein uS17 family. (90 aa)
	mrpl51	54S ribosomal protein L51, mitochondrial; Belongs to the mitochondrion-specific ribosomal protein mL43 family. (145 aa)
	tuf1	Elongation factor Tu, mitochondrial; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis. Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-Tu/EF-1A subfamily. (439 aa)
	mrpl10	54S ribosomal protein L10, mitochondrial; Belongs to the universal ribosomal protein uL15 family. (254 aa)
	rml2	54S ribosomal protein rml2, mitochondrial; Belongs to the universal ribosomal protein uL2 family. (362 aa)
	mrpl16	54S ribosomal protein L16, mitochondrial. (215 aa)

Your Current Organism:

Schizosaccharomyces pombe

NCBI taxonomy Id: 284812
Other names: S. pombe 972h-, Schizosaccharomyces pombe 972h-

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SPCC777.17c	img1	Q9P801	Q9UT87	Probable 54S ribosomal protein L9, mitochondrial.	54S ribosomal protein subunit img1, mitochondrial.	0.999
SPCC777.17c	img2	Q9P801	Q10139	Probable 54S ribosomal protein L9, mitochondrial.	54S ribosomal protein img2, mitochondrial; Belongs to the mitochondrion-specific ribosomal protein mL49 family.	0.882
SPCC777.17c	mrp17	Q9P801	Q9UT82	Probable 54S ribosomal protein L9, mitochondrial.	37S ribosomal protein MRP17, mitochondrial; Belongs to the bacterial ribosomal protein bS6 family.	0.999
SPCC777.17c	mrp2	Q9P801	O42859	Probable 54S ribosomal protein L9, mitochondrial.	Probable 37S ribosomal protein mrp2, mitochondrial.	0.988
SPCC777.17c	mrp20	Q9P801	Q09727	Probable 54S ribosomal protein L9, mitochondrial.	54S ribosomal protein L23, mitochondrial; Involved in mitochondrial genome encoded proteins translation.	0.978
SPCC777.17c	mrp4	Q9P801	O13970	Probable 54S ribosomal protein L9, mitochondrial.	37S ribosomal protein mrp4, mitochondrial; Belongs to the universal ribosomal protein uS2 family.	0.981
SPCC777.17c	mrp5	Q9P801	Q10234	Probable 54S ribosomal protein L9, mitochondrial.	Probable 37S ribosomal protein S5, mitochondrial.	0.976
SPCC777.17c	mrp7	Q9P801	Q9HDV5	Probable 54S ribosomal protein L9, mitochondrial.	54S ribosomal protein L27, mitochondrial; Involved in mitochondrial genome encoded proteins translation.	0.999
SPCC777.17c	mrpl10	Q9P801	Q9Y7M5	Probable 54S ribosomal protein L9, mitochondrial.	54S ribosomal protein L10, mitochondrial; Belongs to the universal ribosomal protein uL15 family.	0.992
SPCC777.17c	mrpl12	Q9P801	Q9USJ9	Probable 54S ribosomal protein L9, mitochondrial.	54S ribosomal protein L12, mitochondrial; Belongs to the bacterial ribosomal protein bL12 family.	0.999
SPCC777.17c	mrpl16	Q9P801	Q9Y822	Probable 54S ribosomal protein L9, mitochondrial.	54S ribosomal protein L16, mitochondrial.	0.987
SPCC777.17c	mrpl17	Q9P801	O94398	Probable 54S ribosomal protein L9, mitochondrial.	54S ribosomal protein L17, mitochondrial; Belongs to the mitochondrion-specific ribosomal protein mL46 family.	0.976
SPCC777.17c	mrpl19	Q9P801	Q9UTK2	Probable 54S ribosomal protein L9, mitochondrial.	54S ribosomal protein L19, mitochondrial; Belongs to the universal ribosomal protein uL11 family.	0.987
SPCC777.17c	mrpl22	Q9P801	O74464	Probable 54S ribosomal protein L9, mitochondrial.	54S ribosomal protein L22, mitochondrial.	0.992
SPCC777.17c	mrpl23	Q9P801	O60118	Probable 54S ribosomal protein L9, mitochondrial.	54S ribosomal protein L23, mitochondrial; Belongs to the universal ribosomal protein uL13 family.	0.992
SPCC777.17c	mrpl24	Q9P801	O60091	Probable 54S ribosomal protein L9, mitochondrial.	54S ribosomal protein L24, mitochondrial.	0.998
SPCC777.17c	mrpl27	Q9P801	Q5WRL1	Probable 54S ribosomal protein L9, mitochondrial.	54S ribosomal protein L27, mitochondrial; Belongs to the mitochondrion-specific ribosomal protein mL41 family.	0.946
SPCC777.17c	mrpl28	Q9P801	O14181	Probable 54S ribosomal protein L9, mitochondrial.	54S ribosomal protein L28, mitochondrial; Involved in mitochondrial genome encoded proteins translation.	0.871
SPCC777.17c	mrpl3	Q9P801	O43042	Probable 54S ribosomal protein L9, mitochondrial.	54S ribosomal protein L3, mitochondrial; Belongs to the ribonuclease III family. Mitochondrion- specific ribosomal protein mL44 subfamily.	0.904
SPCC777.17c	mrpl32	Q9P801	O94379	Probable 54S ribosomal protein L9, mitochondrial.	Probable 54S ribosomal protein L32, mitochondrial; Component of the large subunit of mitochondrial ribosome. Belongs to the bacterial ribosomal protein bL32 family.	0.998