(10 nodes) Organellar large ribosomal subunit network (Schizosaccharomyces pombe)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	mrpl24	54S ribosomal protein L24, mitochondrial. (176 aa)
	mrpl39	54S ribosomal protein L39, mitochondrial. (55 aa)
	mrpl8	54S ribosomal protein L8, mitochondrial; Belongs to the bacterial ribosomal protein bL17 family. (207 aa)
	mrpl32	Probable 54S ribosomal protein L32, mitochondrial; Component of the large subunit of mitochondrial ribosome. Belongs to the bacterial ribosomal protein bL32 family. (103 aa)
	rtc6	54S ribosomal protein c83.06c, mitochondrial; Belongs to the bacterial ribosomal protein bL36 family. (92 aa)
	mrp7	54S ribosomal protein L27, mitochondrial; Involved in mitochondrial genome encoded proteins translation. (153 aa)
	SPCC777.17c	Probable 54S ribosomal protein L9, mitochondrial. (101 aa)
	mrpl12	54S ribosomal protein L12, mitochondrial; Belongs to the bacterial ribosomal protein bL12 family. (173 aa)
	img1	54S ribosomal protein subunit img1, mitochondrial. (182 aa)
	tuf1	Elongation factor Tu, mitochondrial; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis. Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-Tu/EF-1A subfamily. (439 aa)

Your Current Organism:

Schizosaccharomyces pombe

NCBI taxonomy Id: 284812
Other names: S. pombe 972h-, Schizosaccharomyces pombe 972h-

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SPCC777.17c	img1	Q9P801	Q9UT87	Probable 54S ribosomal protein L9, mitochondrial.	54S ribosomal protein subunit img1, mitochondrial.	0.999
SPCC777.17c	mrp7	Q9P801	Q9HDV5	Probable 54S ribosomal protein L9, mitochondrial.	54S ribosomal protein L27, mitochondrial; Involved in mitochondrial genome encoded proteins translation.	0.999
SPCC777.17c	mrpl12	Q9P801	Q9USJ9	Probable 54S ribosomal protein L9, mitochondrial.	54S ribosomal protein L12, mitochondrial; Belongs to the bacterial ribosomal protein bL12 family.	0.999
SPCC777.17c	mrpl24	Q9P801	O60091	Probable 54S ribosomal protein L9, mitochondrial.	54S ribosomal protein L24, mitochondrial.	0.998
SPCC777.17c	mrpl32	Q9P801	O94379	Probable 54S ribosomal protein L9, mitochondrial.	Probable 54S ribosomal protein L32, mitochondrial; Component of the large subunit of mitochondrial ribosome. Belongs to the bacterial ribosomal protein bL32 family.	0.998
SPCC777.17c	mrpl39	Q9P801	O74394	Probable 54S ribosomal protein L9, mitochondrial.	54S ribosomal protein L39, mitochondrial.	0.998
SPCC777.17c	mrpl8	Q9P801	O94345	Probable 54S ribosomal protein L9, mitochondrial.	54S ribosomal protein L8, mitochondrial; Belongs to the bacterial ribosomal protein bL17 family.	0.999
SPCC777.17c	rtc6	Q9P801	O94690	Probable 54S ribosomal protein L9, mitochondrial.	54S ribosomal protein c83.06c, mitochondrial; Belongs to the bacterial ribosomal protein bL36 family.	0.994
SPCC777.17c	tuf1	Q9P801	Q9Y700	Probable 54S ribosomal protein L9, mitochondrial.	Elongation factor Tu, mitochondrial; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis. Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-Tu/EF-1A subfamily.	0.998
img1	SPCC777.17c	Q9UT87	Q9P801	54S ribosomal protein subunit img1, mitochondrial.	Probable 54S ribosomal protein L9, mitochondrial.	0.999
img1	mrp7	Q9UT87	Q9HDV5	54S ribosomal protein subunit img1, mitochondrial.	54S ribosomal protein L27, mitochondrial; Involved in mitochondrial genome encoded proteins translation.	0.999
img1	mrpl12	Q9UT87	Q9USJ9	54S ribosomal protein subunit img1, mitochondrial.	54S ribosomal protein L12, mitochondrial; Belongs to the bacterial ribosomal protein bL12 family.	0.999
img1	mrpl24	Q9UT87	O60091	54S ribosomal protein subunit img1, mitochondrial.	54S ribosomal protein L24, mitochondrial.	0.999
img1	mrpl32	Q9UT87	O94379	54S ribosomal protein subunit img1, mitochondrial.	Probable 54S ribosomal protein L32, mitochondrial; Component of the large subunit of mitochondrial ribosome. Belongs to the bacterial ribosomal protein bL32 family.	0.999
img1	mrpl39	Q9UT87	O74394	54S ribosomal protein subunit img1, mitochondrial.	54S ribosomal protein L39, mitochondrial.	0.998
img1	mrpl8	Q9UT87	O94345	54S ribosomal protein subunit img1, mitochondrial.	54S ribosomal protein L8, mitochondrial; Belongs to the bacterial ribosomal protein bL17 family.	0.999
img1	rtc6	Q9UT87	O94690	54S ribosomal protein subunit img1, mitochondrial.	54S ribosomal protein c83.06c, mitochondrial; Belongs to the bacterial ribosomal protein bL36 family.	0.998
img1	tuf1	Q9UT87	Q9Y700	54S ribosomal protein subunit img1, mitochondrial.	Elongation factor Tu, mitochondrial; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis. Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-Tu/EF-1A subfamily.	0.998
mrp7	SPCC777.17c	Q9HDV5	Q9P801	54S ribosomal protein L27, mitochondrial; Involved in mitochondrial genome encoded proteins translation.	Probable 54S ribosomal protein L9, mitochondrial.	0.999
mrp7	img1	Q9HDV5	Q9UT87	54S ribosomal protein L27, mitochondrial; Involved in mitochondrial genome encoded proteins translation.	54S ribosomal protein subunit img1, mitochondrial.	0.999