(10 nodes) ABC transporter type 1, transmembrane domain superfamily, and Siderophore transport network (Streptomyces agglomeratus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	OEJ57362.1	Multidrug ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (586 aa)
	OEJ57529.1	NHLP bacteriocin export ABC transporter permease/ATPase subunit; Derived by automated computational analysis using gene prediction method: Protein Homology. (949 aa)
	OEJ62838.1	NHLP family bacteriocin export ABC transporter peptidase/permease/ATPase subunit; Derived by automated computational analysis using gene prediction method: Protein Homology. (705 aa)
	OEJ57531.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (74 aa)
	OEJ57685.1	Multidrug ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (603 aa)
	OEJ57686.1	MarR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (151 aa)
	OEJ58091.1	NADPH-dependent ferric siderophore reductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (282 aa)
	OEJ59084.1	NADPH-dependent ferric siderophore reductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (288 aa)
	OEJ62227.1	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (635 aa)
	OEJ62345.1	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (630 aa)

Your Current Organism:

Streptomyces agglomeratus

NCBI taxonomy Id: 285458
Other names: S. agglomeratus

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
OEJ57362.1	OEJ57529.1	BGM19_04610	BGM19_05620	Multidrug ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	NHLP bacteriocin export ABC transporter permease/ATPase subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.807
OEJ57362.1	OEJ57685.1	BGM19_04610	BGM19_06620	Multidrug ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Multidrug ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.566
OEJ57362.1	OEJ62227.1	BGM19_04610	BGM19_33610	Multidrug ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.543
OEJ57362.1	OEJ62838.1	BGM19_04610	BGM19_05625	Multidrug ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	NHLP family bacteriocin export ABC transporter peptidase/permease/ATPase subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.802
OEJ57529.1	OEJ57362.1	BGM19_05620	BGM19_04610	NHLP bacteriocin export ABC transporter permease/ATPase subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.	Multidrug ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.807
OEJ57529.1	OEJ57531.1	BGM19_05620	BGM19_05635	NHLP bacteriocin export ABC transporter permease/ATPase subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.745
OEJ57529.1	OEJ57685.1	BGM19_05620	BGM19_06620	NHLP bacteriocin export ABC transporter permease/ATPase subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.	Multidrug ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.792
OEJ57529.1	OEJ58091.1	BGM19_05620	BGM19_09000	NHLP bacteriocin export ABC transporter permease/ATPase subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.	NADPH-dependent ferric siderophore reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.959
OEJ57529.1	OEJ59084.1	BGM19_05620	BGM19_14865	NHLP bacteriocin export ABC transporter permease/ATPase subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.	NADPH-dependent ferric siderophore reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.959
OEJ57529.1	OEJ62227.1	BGM19_05620	BGM19_33610	NHLP bacteriocin export ABC transporter permease/ATPase subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.773
OEJ57529.1	OEJ62345.1	BGM19_05620	BGM19_34365	NHLP bacteriocin export ABC transporter permease/ATPase subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.815
OEJ57529.1	OEJ62838.1	BGM19_05620	BGM19_05625	NHLP bacteriocin export ABC transporter permease/ATPase subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.	NHLP family bacteriocin export ABC transporter peptidase/permease/ATPase subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.987
OEJ57531.1	OEJ57529.1	BGM19_05635	BGM19_05620	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	NHLP bacteriocin export ABC transporter permease/ATPase subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.745
OEJ57531.1	OEJ62838.1	BGM19_05635	BGM19_05625	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	NHLP family bacteriocin export ABC transporter peptidase/permease/ATPase subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.670
OEJ57685.1	OEJ57362.1	BGM19_06620	BGM19_04610	Multidrug ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Multidrug ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.566
OEJ57685.1	OEJ57529.1	BGM19_06620	BGM19_05620	Multidrug ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	NHLP bacteriocin export ABC transporter permease/ATPase subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.792
OEJ57685.1	OEJ57686.1	BGM19_06620	BGM19_06625	Multidrug ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	MarR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.661
OEJ57685.1	OEJ62838.1	BGM19_06620	BGM19_05625	Multidrug ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	NHLP family bacteriocin export ABC transporter peptidase/permease/ATPase subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.794
OEJ57686.1	OEJ57685.1	BGM19_06625	BGM19_06620	MarR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Multidrug ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.661
OEJ58091.1	OEJ57529.1	BGM19_09000	BGM19_05620	NADPH-dependent ferric siderophore reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	NHLP bacteriocin export ABC transporter permease/ATPase subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.959