(45 nodes) Mixed, incl. Roadblock/LC7 domain, and GPN-loop GTPase network (Streptomyces agglomeratus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	OEJ57523.1	Cytochrome; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the cytochrome P450 family. (429 aa)
	OEJ57524.1	ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (206 aa)
	OEJ57525.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (122 aa)
	OEJ57526.1	Multi-component regulatory system-10; Derived by automated computational analysis using gene prediction method: Protein Homology. (136 aa)
	OEJ62837.1	ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (489 aa)
	OEJ57574.1	ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (196 aa)
	OEJ57575.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (121 aa)
	OEJ57576.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (134 aa)
	OEJ57577.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (778 aa)
	BGM19_05985	Cytochrome; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology. (205 aa)
	OEJ57580.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (119 aa)
	OEJ57581.1	Dynein regulation protein LC7; Derived by automated computational analysis using gene prediction method: Protein Homology. (145 aa)
	OEJ57582.1	ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (463 aa)
	OEJ57895.1	ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (201 aa)
	OEJ57896.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (132 aa)
	OEJ57897.1	Dynein regulation protein LC7; Derived by automated computational analysis using gene prediction method: Protein Homology. (153 aa)
	OEJ57898.1	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (927 aa)
	OEJ58803.1	Cytochrome; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the cytochrome P450 family. (423 aa)
	OEJ58804.1	ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (208 aa)
	OEJ58805.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (120 aa)
	OEJ63017.1	Dynein regulation protein LC7; Derived by automated computational analysis using gene prediction method: Protein Homology. (139 aa)
	OEJ63018.1	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (513 aa)
	OEJ60809.1	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (998 aa)
	OEJ60810.1	Dynein regulation protein LC7; Derived by automated computational analysis using gene prediction method: Protein Homology. (142 aa)
	OEJ60811.1	Multi-component regulatory system-8; Derived by automated computational analysis using gene prediction method: Protein Homology. (135 aa)
	OEJ63306.1	ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (216 aa)
	OEJ60812.1	Oxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (411 aa)
	OEJ60995.1	ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (193 aa)
	OEJ60996.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (187 aa)
	OEJ63331.1	Dynein regulation protein LC7; Derived by automated computational analysis using gene prediction method: Protein Homology. (137 aa)
	OEJ60997.1	ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology. (1067 aa)
	OEJ60998.1	ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (193 aa)
	OEJ60999.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (135 aa)
	OEJ61000.1	Dynein regulation protein LC7; Derived by automated computational analysis using gene prediction method: Protein Homology. (137 aa)
	OEJ61001.1	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (1246 aa)
	OEJ61816.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (690 aa)
	OEJ61817.1	Dynein regulation protein LC7; Derived by automated computational analysis using gene prediction method: Protein Homology. (144 aa)
	OEJ61818.1	Multi-component regulatory system-3; Derived by automated computational analysis using gene prediction method: Protein Homology. (124 aa)
	OEJ61819.1	ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (201 aa)
	OEJ61820.1	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (189 aa)
	OEJ62084.1	ATPase; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (781 aa)
	OEJ62085.1	Dynein regulation protein LC7; Derived by automated computational analysis using gene prediction method: Protein Homology. (146 aa)
	OEJ62086.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (137 aa)
	OEJ62087.1	ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (201 aa)
	OEJ62088.1	Dynein regulation protein LC7; Derived by automated computational analysis using gene prediction method: Protein Homology. (137 aa)

Your Current Organism:

Streptomyces agglomeratus

NCBI taxonomy Id: 285458
Other names: S. agglomeratus

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... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BGM19_05985	OEJ57525.1	BGM19_05985	BGM19_05595	Cytochrome; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.472
BGM19_05985	OEJ57526.1	BGM19_05985	BGM19_05600	Cytochrome; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.	Multi-component regulatory system-10; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.878
BGM19_05985	OEJ57576.1	BGM19_05985	BGM19_05955	Cytochrome; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.893
BGM19_05985	OEJ57577.1	BGM19_05985	BGM19_05960	Cytochrome; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.740
BGM19_05985	OEJ57580.1	BGM19_05985	BGM19_05990	Cytochrome; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.930
BGM19_05985	OEJ57581.1	BGM19_05985	BGM19_05995	Cytochrome; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.	Dynein regulation protein LC7; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.987
BGM19_05985	OEJ57582.1	BGM19_05985	BGM19_06000	Cytochrome; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.	ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.963
BGM19_05985	OEJ57896.1	BGM19_05985	BGM19_07875	Cytochrome; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.774
BGM19_05985	OEJ57897.1	BGM19_05985	BGM19_07880	Cytochrome; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.	Dynein regulation protein LC7; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.897
BGM19_05985	OEJ57898.1	BGM19_05985	BGM19_07885	Cytochrome; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.716
BGM19_05985	OEJ60809.1	BGM19_05985	BGM19_25170	Cytochrome; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.679
BGM19_05985	OEJ60810.1	BGM19_05985	BGM19_25175	Cytochrome; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.	Dynein regulation protein LC7; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.891
BGM19_05985	OEJ60811.1	BGM19_05985	BGM19_25180	Cytochrome; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.	Multi-component regulatory system-8; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.762
BGM19_05985	OEJ60996.1	BGM19_05985	BGM19_26260	Cytochrome; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.767
BGM19_05985	OEJ60997.1	BGM19_05985	BGM19_26270	Cytochrome; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.	ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.740
BGM19_05985	OEJ60999.1	BGM19_05985	BGM19_26280	Cytochrome; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.767
BGM19_05985	OEJ61000.1	BGM19_05985	BGM19_26285	Cytochrome; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.	Dynein regulation protein LC7; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.893
BGM19_05985	OEJ61001.1	BGM19_05985	BGM19_26290	Cytochrome; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.754
BGM19_05985	OEJ61816.1	BGM19_05985	BGM19_31120	Cytochrome; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.751
BGM19_05985	OEJ61817.1	BGM19_05985	BGM19_31125	Cytochrome; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.	Dynein regulation protein LC7; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.894