(17 nodes) Mixed, incl. Nitrate/nitrite sensing protein, bacterial, and Roadblock/LC7 domain network (Streptomyces agglomeratus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	OEJ57895.1	ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (201 aa)
	OEJ57896.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (132 aa)
	OEJ57897.1	Dynein regulation protein LC7; Derived by automated computational analysis using gene prediction method: Protein Homology. (153 aa)
	OEJ57898.1	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (927 aa)
	OEJ60995.1	ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (193 aa)
	OEJ60996.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (187 aa)
	OEJ63331.1	Dynein regulation protein LC7; Derived by automated computational analysis using gene prediction method: Protein Homology. (137 aa)
	OEJ60997.1	ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology. (1067 aa)
	OEJ60998.1	ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (193 aa)
	OEJ60999.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (135 aa)
	OEJ61000.1	Dynein regulation protein LC7; Derived by automated computational analysis using gene prediction method: Protein Homology. (137 aa)
	OEJ61001.1	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (1246 aa)
	OEJ62084.1	ATPase; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (781 aa)
	OEJ62085.1	Dynein regulation protein LC7; Derived by automated computational analysis using gene prediction method: Protein Homology. (146 aa)
	OEJ62086.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (137 aa)
	OEJ62087.1	ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (201 aa)
	OEJ62088.1	Dynein regulation protein LC7; Derived by automated computational analysis using gene prediction method: Protein Homology. (137 aa)

Your Current Organism:

Streptomyces agglomeratus

NCBI taxonomy Id: 285458
Other names: S. agglomeratus

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
OEJ57895.1	OEJ57896.1	BGM19_07870	BGM19_07875	ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.971
OEJ57895.1	OEJ57897.1	BGM19_07870	BGM19_07880	ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Dynein regulation protein LC7; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.987
OEJ57895.1	OEJ57898.1	BGM19_07870	BGM19_07885	ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.944
OEJ57895.1	OEJ60996.1	BGM19_07870	BGM19_26260	ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.771
OEJ57895.1	OEJ60997.1	BGM19_07870	BGM19_26270	ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.751
OEJ57895.1	OEJ60999.1	BGM19_07870	BGM19_26280	ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.772
OEJ57895.1	OEJ61000.1	BGM19_07870	BGM19_26285	ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Dynein regulation protein LC7; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.897
OEJ57895.1	OEJ61001.1	BGM19_07870	BGM19_26290	ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.759
OEJ57895.1	OEJ62084.1	BGM19_07870	BGM19_32725	ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ATPase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.767
OEJ57895.1	OEJ62085.1	BGM19_07870	BGM19_32730	ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Dynein regulation protein LC7; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.897
OEJ57895.1	OEJ62086.1	BGM19_07870	BGM19_32735	ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.777
OEJ57895.1	OEJ62088.1	BGM19_07870	BGM19_32745	ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Dynein regulation protein LC7; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.897
OEJ57895.1	OEJ63331.1	BGM19_07870	BGM19_26265	ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Dynein regulation protein LC7; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.897
OEJ57896.1	OEJ57895.1	BGM19_07875	BGM19_07870	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.971
OEJ57896.1	OEJ57897.1	BGM19_07875	BGM19_07880	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Dynein regulation protein LC7; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.972
OEJ57896.1	OEJ57898.1	BGM19_07875	BGM19_07885	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.950
OEJ57896.1	OEJ60995.1	BGM19_07875	BGM19_26255	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.861
OEJ57896.1	OEJ60997.1	BGM19_07875	BGM19_26270	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.805
OEJ57896.1	OEJ60998.1	BGM19_07875	BGM19_26275	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.861
OEJ57896.1	OEJ61000.1	BGM19_07875	BGM19_26285	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Dynein regulation protein LC7; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.812