(6 nodes) Mce/MlaD network (Streptomyces agglomeratus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	OEJ62301.1	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (345 aa)
	OEJ63522.1	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (327 aa)
	OEJ63523.1	Mammalian cell entry protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (376 aa)
	OEJ62302.1	Mammalian cell entry protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (438 aa)
	OEJ62303.1	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (421 aa)
	OEJ62300.1	Mammalian cell entry protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (420 aa)

Your Current Organism:

Streptomyces agglomeratus

NCBI taxonomy Id: 285458
Other names: S. agglomeratus

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
OEJ62300.1	OEJ62301.1	BGM19_34065	BGM19_34070	Mammalian cell entry protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.996
OEJ62300.1	OEJ62302.1	BGM19_34065	BGM19_34085	Mammalian cell entry protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Mammalian cell entry protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.981
OEJ62300.1	OEJ62303.1	BGM19_34065	BGM19_34090	Mammalian cell entry protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.991
OEJ62300.1	OEJ63522.1	BGM19_34065	BGM19_34075	Mammalian cell entry protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.996
OEJ62300.1	OEJ63523.1	BGM19_34065	BGM19_34080	Mammalian cell entry protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Mammalian cell entry protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.993
OEJ62301.1	OEJ62300.1	BGM19_34070	BGM19_34065	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Mammalian cell entry protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.996
OEJ62301.1	OEJ62302.1	BGM19_34070	BGM19_34085	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Mammalian cell entry protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.979
OEJ62301.1	OEJ62303.1	BGM19_34070	BGM19_34090	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.982
OEJ62301.1	OEJ63522.1	BGM19_34070	BGM19_34075	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.987
OEJ62301.1	OEJ63523.1	BGM19_34070	BGM19_34080	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Mammalian cell entry protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.977
OEJ62302.1	OEJ62300.1	BGM19_34085	BGM19_34065	Mammalian cell entry protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Mammalian cell entry protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.981
OEJ62302.1	OEJ62301.1	BGM19_34085	BGM19_34070	Mammalian cell entry protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.979
OEJ62302.1	OEJ62303.1	BGM19_34085	BGM19_34090	Mammalian cell entry protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.990
OEJ62302.1	OEJ63522.1	BGM19_34085	BGM19_34075	Mammalian cell entry protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.979
OEJ62302.1	OEJ63523.1	BGM19_34085	BGM19_34080	Mammalian cell entry protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Mammalian cell entry protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.997
OEJ62303.1	OEJ62300.1	BGM19_34090	BGM19_34065	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Mammalian cell entry protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.991
OEJ62303.1	OEJ62301.1	BGM19_34090	BGM19_34070	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.982
OEJ62303.1	OEJ62302.1	BGM19_34090	BGM19_34085	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Mammalian cell entry protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.990
OEJ62303.1	OEJ63522.1	BGM19_34090	BGM19_34075	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.954
OEJ62303.1	OEJ63523.1	BGM19_34090	BGM19_34080	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Mammalian cell entry protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.973