(73 nodes) MetI-like superfamily network (Streptomyces agglomeratus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	OEJ63070.1	2-aminoethylphosphonate ABC transporter permease subunit; Derived by automated computational analysis using gene prediction method: Protein Homology. (276 aa)
	OEJ59199.1	Sugar transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (297 aa)
	OEJ63087.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (427 aa)
	OEJ59223.1	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (300 aa)
	OEJ59632.1	Phosphate ABC transporter permease subunit PstC; Part of the binding-protein-dependent transport system for phosphate; probably responsible for the translocation of the substrate across the membrane; Belongs to the binding-protein-dependent transport system permease family. CysTW subfamily. (329 aa)
	OEJ59633.1	Phosphate ABC transporter, permease protein PstA; Derived by automated computational analysis using gene prediction method: Protein Homology. (357 aa)
	OEJ60114.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (252 aa)
	OEJ60115.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (228 aa)
	OEJ60364.1	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (287 aa)
	OEJ60365.1	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (298 aa)
	OEJ60424.1	Glycine/betaine ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (682 aa)
	OEJ60660.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (309 aa)
	OEJ60661.1	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (316 aa)
	OEJ60666.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (307 aa)
	OEJ60667.1	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (335 aa)
	OEJ60761.1	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (337 aa)
	OEJ60762.1	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (292 aa)
	OEJ60784.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (322 aa)
	OEJ63325.1	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (332 aa)
	OEJ60942.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (335 aa)
	OEJ63346.1	Iron ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (539 aa)
	OEJ61142.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (310 aa)
	OEJ61143.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (268 aa)
	OEJ61174.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (305 aa)
	OEJ61175.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (356 aa)
	OEJ61227.1	Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (300 aa)
	OEJ61228.1	Glutamate ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (221 aa)
	OEJ63387.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (299 aa)
	OEJ61387.1	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (307 aa)
	OEJ61415.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (342 aa)
	OEJ63393.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (273 aa)
	OEJ61439.1	Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (301 aa)
	OEJ63396.1	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (277 aa)
	OEJ61448.1	Sulfate ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (304 aa)
	OEJ61657.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (266 aa)
	OEJ61729.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (294 aa)
	OEJ61990.1	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (308 aa)
	OEJ61991.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (316 aa)
	OEJ62017.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (321 aa)
	OEJ62018.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (293 aa)
	OEJ62025.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (606 aa)
	OEJ62037.1	Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (308 aa)
	OEJ62038.1	Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (308 aa)
	OEJ63476.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (334 aa)
	OEJ62046.1	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (289 aa)
	OEJ62054.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (317 aa)
	OEJ62329.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (295 aa)
	OEJ63501.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (270 aa)
	OEJ62064.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (307 aa)
	OEJ62063.1	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (306 aa)
	OEJ56993.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (281 aa)
	OEJ56994.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (292 aa)
	OEJ57361.1	Molybdenum ABC transporter permease subunit; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family. (644 aa)
	OEJ57394.1	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (308 aa)
	OEJ57395.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (328 aa)
	OEJ57573.1	Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (304 aa)
	OEJ62853.1	Glutamate ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (221 aa)
	OEJ57679.1	Iron ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (532 aa)
	OEJ58039.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (223 aa)
	OEJ58404.1	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (291 aa)
	OEJ58405.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (457 aa)
	OEJ63000.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (275 aa)
	OEJ58681.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (342 aa)
	OEJ63044.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (288 aa)
	OEJ59003.1	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (276 aa)
	OEJ59033.1	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (324 aa)
	OEJ59034.1	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (299 aa)
	OEJ59096.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (343 aa)
	OEJ59097.1	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (291 aa)
	OEJ59119.1	Ectoine/hydroxyectoine ABC transporter permease subunit EhuC; Derived by automated computational analysis using gene prediction method: Protein Homology. (224 aa)
	OEJ59120.1	Ectoine/hydroxyectoine ABC transporter permease subunit EhuD; Derived by automated computational analysis using gene prediction method: Protein Homology. (216 aa)
	OEJ59134.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (265 aa)
	OEJ59198.1	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (277 aa)

Your Current Organism:

Streptomyces agglomeratus

NCBI taxonomy Id: 285458
Other names: S. agglomeratus

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
OEJ56993.1	OEJ56994.1	BGM19_02135	BGM19_02140	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.991
OEJ56993.1	OEJ57394.1	BGM19_02135	BGM19_04830	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.658
OEJ56993.1	OEJ57395.1	BGM19_02135	BGM19_04835	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.905
OEJ56993.1	OEJ58404.1	BGM19_02135	BGM19_10810	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.654
OEJ56993.1	OEJ58405.1	BGM19_02135	BGM19_10815	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.857
OEJ56993.1	OEJ58681.1	BGM19_02135	BGM19_12440	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.959
OEJ56993.1	OEJ59003.1	BGM19_02135	BGM19_14375	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.602
OEJ56993.1	OEJ59033.1	BGM19_02135	BGM19_14535	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.960
OEJ56993.1	OEJ59034.1	BGM19_02135	BGM19_14540	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.657
OEJ56993.1	OEJ59096.1	BGM19_02135	BGM19_14940	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.902
OEJ56993.1	OEJ59097.1	BGM19_02135	BGM19_14945	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.657
OEJ56993.1	OEJ59199.1	BGM19_02135	BGM19_15605	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.948
OEJ56993.1	OEJ59223.1	BGM19_02135	BGM19_15745	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.657
OEJ56993.1	OEJ60364.1	BGM19_02135	BGM19_22530	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.659
OEJ56993.1	OEJ60365.1	BGM19_02135	BGM19_22535	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.902
OEJ56993.1	OEJ60761.1	BGM19_02135	BGM19_24875	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.949
OEJ56993.1	OEJ61387.1	BGM19_02135	BGM19_28610	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.642
OEJ56993.1	OEJ61439.1	BGM19_02135	BGM19_28915	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.949
OEJ56993.1	OEJ61990.1	BGM19_02135	BGM19_32195	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.881
OEJ56993.1	OEJ61991.1	BGM19_02135	BGM19_32200	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.646