(3 nodes) Prokaryotic dksA/traR C4-type zinc finger network (Streptomyces agglomeratus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	OEJ56909.1	Molecular chaperone DnaK; Derived by automated computational analysis using gene prediction method: Protein Homology. (109 aa)
	OEJ62724.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (123 aa)
	OEJ58544.1	DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (264 aa)

Your Current Organism:

Streptomyces agglomeratus

NCBI taxonomy Id: 285458
Other names: S. agglomeratus

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
OEJ56909.1	OEJ58544.1	BGM19_01555	BGM19_11635	Molecular chaperone DnaK; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.613
OEJ56909.1	OEJ62724.1	BGM19_01555	BGM19_01560	Molecular chaperone DnaK; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.822
OEJ58544.1	OEJ56909.1	BGM19_11635	BGM19_01555	DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Molecular chaperone DnaK; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.613
OEJ62724.1	OEJ56909.1	BGM19_01560	BGM19_01555	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Molecular chaperone DnaK; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.822