STRINGSTRING
lgrD_1 lgrD_1 lgrB_2 lgrB_2 tycC_3 tycC_3 lgrD_2 lgrD_2 pksJ pksJ AOT61583.1 AOT61583.1 lgrD_4 lgrD_4 tycC_4 tycC_4 srfAB_2 srfAB_2 lgrD_5 lgrD_5 dhbF_1 dhbF_1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
lgrD_1Linear gramicidin synthase subunit D. (89 aa)
lgrB_2Linear gramicidin synthase subunit B. (553 aa)
tycC_3Tyrocidine synthase 3. (2125 aa)
lgrD_2Linear gramicidin synthase subunit D. (4618 aa)
pksJPolyketide synthase PksJ. (3156 aa)
AOT61583.1Phenolphthiocerol synthesis polyketide synthase type I Pks15/1. (2148 aa)
lgrD_4Linear gramicidin synthase subunit D. (315 aa)
tycC_4Tyrocidine synthase 3. (803 aa)
srfAB_2Surfactin synthase subunit 2. (86 aa)
lgrD_5Linear gramicidin synthase subunit D; Belongs to the ATP-dependent AMP-binding enzyme family. (513 aa)
dhbF_1Dimodular nonribosomal peptide synthase. (2443 aa)
Your Current Organism:
Streptomyces rubrolavendulae
NCBI taxonomy Id: 285473
Other names: S. rubrolavendulae
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