(5 nodes) DNA ligase (ATP) activity network (Streptomyces rubrolavendulae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AOT61050.1	Putative DNA ligase-like protein. (306 aa)
	AOT61051.1	Putative DNA ligase-like protein. (328 aa)
	ykoV	Putative DNA repair protein YkoV; With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD. Belongs to the prokaryotic Ku family. (419 aa)
	AOT62104.1	Putative DNA ligase-like protein. (362 aa)
	ykoU	Putative ATP-dependent DNA ligase YkoU. (331 aa)

Your Current Organism:

Streptomyces rubrolavendulae

NCBI taxonomy Id: 285473
Other names: S. rubrolavendulae

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AOT61050.1	AOT61051.1	A4G23_03927	A4G23_03928	Putative DNA ligase-like protein.	Putative DNA ligase-like protein.	0.963
AOT61050.1	ykoU	A4G23_03927	A4G23_04998	Putative DNA ligase-like protein.	Putative ATP-dependent DNA ligase YkoU.	0.874
AOT61050.1	ykoV	A4G23_03927	A4G23_03929	Putative DNA ligase-like protein.	Putative DNA repair protein YkoV; With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD. Belongs to the prokaryotic Ku family.	0.961
AOT61051.1	AOT61050.1	A4G23_03928	A4G23_03927	Putative DNA ligase-like protein.	Putative DNA ligase-like protein.	0.963
AOT61051.1	AOT62104.1	A4G23_03928	A4G23_04997	Putative DNA ligase-like protein.	Putative DNA ligase-like protein.	0.988
AOT61051.1	ykoV	A4G23_03928	A4G23_03929	Putative DNA ligase-like protein.	Putative DNA repair protein YkoV; With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD. Belongs to the prokaryotic Ku family.	0.988
AOT62104.1	AOT61051.1	A4G23_04997	A4G23_03928	Putative DNA ligase-like protein.	Putative DNA ligase-like protein.	0.988
AOT62104.1	ykoU	A4G23_04997	A4G23_04998	Putative DNA ligase-like protein.	Putative ATP-dependent DNA ligase YkoU.	0.996
AOT62104.1	ykoV	A4G23_04997	A4G23_03929	Putative DNA ligase-like protein.	Putative DNA repair protein YkoV; With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD. Belongs to the prokaryotic Ku family.	0.925
ykoU	AOT61050.1	A4G23_04998	A4G23_03927	Putative ATP-dependent DNA ligase YkoU.	Putative DNA ligase-like protein.	0.874
ykoU	AOT62104.1	A4G23_04998	A4G23_04997	Putative ATP-dependent DNA ligase YkoU.	Putative DNA ligase-like protein.	0.996
ykoU	ykoV	A4G23_04998	A4G23_03929	Putative ATP-dependent DNA ligase YkoU.	Putative DNA repair protein YkoV; With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD. Belongs to the prokaryotic Ku family.	0.914
ykoV	AOT61050.1	A4G23_03929	A4G23_03927	Putative DNA repair protein YkoV; With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD. Belongs to the prokaryotic Ku family.	Putative DNA ligase-like protein.	0.961
ykoV	AOT61051.1	A4G23_03929	A4G23_03928	Putative DNA repair protein YkoV; With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD. Belongs to the prokaryotic Ku family.	Putative DNA ligase-like protein.	0.988
ykoV	AOT62104.1	A4G23_03929	A4G23_04997	Putative DNA repair protein YkoV; With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD. Belongs to the prokaryotic Ku family.	Putative DNA ligase-like protein.	0.925
ykoV	ykoU	A4G23_03929	A4G23_04998	Putative DNA repair protein YkoV; With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD. Belongs to the prokaryotic Ku family.	Putative ATP-dependent DNA ligase YkoU.	0.914