(11 nodes) Mixed, incl. Iron-sulfur cluster assembly, and Aminotransferase class V domain network (Streptomyces rubrolavendulae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AOT58322.1	Hypothetical protein. (112 aa)
	nifU	NifU-like protein. (152 aa)
	csd_1	Putative cysteine desulfurase; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. (418 aa)
	yurY	Vegetative protein 296. (254 aa)
	sufD	FeS cluster assembly protein SufD. (391 aa)
	sufB	FeS cluster assembly protein SufB. (471 aa)
	AOT58329.1	Bacterial regulatory protein, arsR family. (274 aa)
	drrA_2	Daunorubicin/doxorubicin resistance ATP-binding protein DrrA. (308 aa)
	AOT58331.1	ABC-2 type transporter. (255 aa)
	csd_2	Putative cysteine desulfurase. (534 aa)
	yokD	SPBc2 prophage-derived aminoglycoside N(3')-acetyltransferase-like protein YokD. (287 aa)

Your Current Organism:

Streptomyces rubrolavendulae

NCBI taxonomy Id: 285473
Other names: S. rubrolavendulae

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AOT58322.1	AOT58329.1	A4G23_01131	A4G23_01138	Hypothetical protein.	Bacterial regulatory protein, arsR family.	0.769
AOT58322.1	AOT58331.1	A4G23_01131	A4G23_01140	Hypothetical protein.	ABC-2 type transporter.	0.540
AOT58322.1	csd_1	A4G23_01131	A4G23_01133	Hypothetical protein.	Putative cysteine desulfurase; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family.	0.947
AOT58322.1	csd_2	A4G23_01131	A4G23_01330	Hypothetical protein.	Putative cysteine desulfurase.	0.532
AOT58322.1	drrA_2	A4G23_01131	A4G23_01139	Hypothetical protein.	Daunorubicin/doxorubicin resistance ATP-binding protein DrrA.	0.540
AOT58322.1	nifU	A4G23_01131	A4G23_01132	Hypothetical protein.	NifU-like protein.	0.992
AOT58322.1	sufB	A4G23_01131	A4G23_01137	Hypothetical protein.	FeS cluster assembly protein SufB.	0.947
AOT58322.1	sufD	A4G23_01131	A4G23_01136	Hypothetical protein.	FeS cluster assembly protein SufD.	0.947
AOT58322.1	yokD	A4G23_01131	A4G23_05115	Hypothetical protein.	SPBc2 prophage-derived aminoglycoside N(3')-acetyltransferase-like protein YokD.	0.540
AOT58322.1	yurY	A4G23_01131	A4G23_01134	Hypothetical protein.	Vegetative protein 296.	0.957
AOT58329.1	AOT58322.1	A4G23_01138	A4G23_01131	Bacterial regulatory protein, arsR family.	Hypothetical protein.	0.769
AOT58329.1	AOT58331.1	A4G23_01138	A4G23_01140	Bacterial regulatory protein, arsR family.	ABC-2 type transporter.	0.540
AOT58329.1	csd_1	A4G23_01138	A4G23_01133	Bacterial regulatory protein, arsR family.	Putative cysteine desulfurase; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family.	0.800
AOT58329.1	drrA_2	A4G23_01138	A4G23_01139	Bacterial regulatory protein, arsR family.	Daunorubicin/doxorubicin resistance ATP-binding protein DrrA.	0.540
AOT58329.1	nifU	A4G23_01138	A4G23_01132	Bacterial regulatory protein, arsR family.	NifU-like protein.	0.837
AOT58329.1	sufB	A4G23_01138	A4G23_01137	Bacterial regulatory protein, arsR family.	FeS cluster assembly protein SufB.	0.979
AOT58329.1	sufD	A4G23_01138	A4G23_01136	Bacterial regulatory protein, arsR family.	FeS cluster assembly protein SufD.	0.826
AOT58329.1	yokD	A4G23_01138	A4G23_05115	Bacterial regulatory protein, arsR family.	SPBc2 prophage-derived aminoglycoside N(3')-acetyltransferase-like protein YokD.	0.540
AOT58329.1	yurY	A4G23_01138	A4G23_01134	Bacterial regulatory protein, arsR family.	Vegetative protein 296.	0.807
AOT58331.1	AOT58322.1	A4G23_01140	A4G23_01131	ABC-2 type transporter.	Hypothetical protein.	0.540