STRINGSTRING
sbcC_1 sbcC_1 sbcD_1 sbcD_1 AOT57239.1 AOT57239.1 AOT57435.1 AOT57435.1 recQ_1 recQ_1 topA topA recQ_2 recQ_2 recQ_3 recQ_3 sbcD_3 sbcD_3 sbcC_3 sbcC_3
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
sbcC_1Nuclease SbcCD subunit C. (1002 aa)
sbcD_1Nuclease SbcCD subunit D; SbcCD cleaves DNA hairpin structures. These structures can inhibit DNA replication and are intermediates in certain DNA recombination reactions. The complex acts as a 3'->5' double strand exonuclease that can open hairpins. It also has a 5' single-strand endonuclease activity; Belongs to the SbcD family. (398 aa)
AOT57239.1Hypothetical protein. (84 aa)
AOT57435.1Eukaryotic DNA topoisomerase I, catalytic core. (342 aa)
recQ_1ATP-dependent DNA helicase RecQ. (567 aa)
topADNA topoisomerase 1; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] (954 aa)
recQ_2ATP-dependent DNA helicase RecQ. (720 aa)
recQ_3ATP-dependent DNA helicase RecQ. (613 aa)
sbcD_3Nuclease SbcCD subunit D. (398 aa)
sbcC_3Nuclease SbcCD subunit C. (1002 aa)
Your Current Organism:
Streptomyces rubrolavendulae
NCBI taxonomy Id: 285473
Other names: S. rubrolavendulae
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