(41 nodes) MetI-like superfamily, and Bacterial extracellular solute-binding protein network (Streptomyces rubrolavendulae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	lpqY	Trehalose-binding lipoprotein LpqY precursor. (524 aa)
	sugA_1	Trehalose transport system permease protein SugA. (321 aa)
	sugB_1	Trehalose transport system permease protein SugB. (277 aa)
	sugC_1	Trehalose import ATP-binding protein SugC; Belongs to the ABC transporter superfamily. (398 aa)
	cytR_1	HTH-type transcriptional repressor CytR. (345 aa)
	csxA	Exo-beta-D-glucosaminidase precursor. (829 aa)
	msmE_1	Multiple sugar-binding protein precursor. (439 aa)
	lacF_1	Lactose transport system permease protein LacF. (320 aa)
	araQ_2	L-arabinose transport system permease protein AraQ. (281 aa)
	rppH	RNA pyrophosphohydrolase; Belongs to the Nudix hydrolase family. (157 aa)
	araQ_3	L-arabinose transport system permease protein AraQ. (267 aa)
	lacF_2	Lactose transport system permease protein LacF. (318 aa)
	ugpB	Sn-glycerol-3-phosphate-binding periplasmic protein UgpB precursor. (418 aa)
	araQ_4	L-arabinose transport system permease protein AraQ. (276 aa)
	lacF_3	Lactose transport system permease protein LacF. (329 aa)
	msmE_2	Multiple sugar-binding protein precursor. (429 aa)
	msmE_3	Multiple sugar-binding protein precursor. (447 aa)
	lacF_4	Lactose transport system permease protein LacF. (450 aa)
	araQ_5	L-arabinose transport system permease protein AraQ. (306 aa)
	malG	Maltose transport system permease protein MalG. (312 aa)
	ycjO_1	Inner membrane ABC transporter permease protein YcjO. (328 aa)
	malE	Maltose-binding periplasmic protein precursor. (426 aa)
	yesO_1	Putative ABC transporter substrate-binding protein YesO. (453 aa)
	lacF_5	Lactose transport system permease protein LacF. (335 aa)
	lacG_1	Lactose transport system permease protein LacG. (282 aa)
	msmE_5	Multiple sugar-binding protein precursor. (455 aa)
	ycjO_2	Inner membrane ABC transporter permease protein YcjO. (464 aa)
	araQ_6	L-arabinose transport system permease protein AraQ. (337 aa)
	sugC_2	Trehalose import ATP-binding protein SugC; Belongs to the ABC transporter superfamily. (401 aa)
	malX	Maltose/maltodextrin-binding protein precursor. (427 aa)
	ycjO_3	Inner membrane ABC transporter permease protein YcjO. (336 aa)
	sugB_2	Trehalose transport system permease protein SugB. (304 aa)
	AOT61058.1	Bacterial extracellular solute-binding protein. (439 aa)
	lacE	Lactose-binding protein precursor. (435 aa)
	lacF_6	Lactose transport system permease protein LacF. (315 aa)
	lacG_2	Lactose transport system permease protein LacG. (304 aa)
	AOT61738.1	Bacterial extracellular solute-binding protein. (501 aa)
	lacF_7	Lactose transport system permease protein LacF. (307 aa)
	sugB_3	Trehalose transport system permease protein SugB. (358 aa)
	nagC_7	N-acetylglucosamine repressor. (403 aa)
	yesO_3	Putative ABC transporter substrate-binding protein YesO. (415 aa)

Your Current Organism:

Streptomyces rubrolavendulae

NCBI taxonomy Id: 285473
Other names: S. rubrolavendulae

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AOT61058.1	araQ_2	A4G23_03935	A4G23_00343	Bacterial extracellular solute-binding protein.	L-arabinose transport system permease protein AraQ.	0.423
AOT61058.1	araQ_3	A4G23_03935	A4G23_00423	Bacterial extracellular solute-binding protein.	L-arabinose transport system permease protein AraQ.	0.423
AOT61058.1	araQ_4	A4G23_03935	A4G23_00443	Bacterial extracellular solute-binding protein.	L-arabinose transport system permease protein AraQ.	0.423
AOT61058.1	araQ_5	A4G23_03935	A4G23_00505	Bacterial extracellular solute-binding protein.	L-arabinose transport system permease protein AraQ.	0.945
AOT61058.1	araQ_6	A4G23_03935	A4G23_01995	Bacterial extracellular solute-binding protein.	L-arabinose transport system permease protein AraQ.	0.951
AOT61058.1	lacF_1	A4G23_03935	A4G23_00342	Bacterial extracellular solute-binding protein.	Lactose transport system permease protein LacF.	0.410
AOT61058.1	lacF_2	A4G23_03935	A4G23_00424	Bacterial extracellular solute-binding protein.	Lactose transport system permease protein LacF.	0.481
AOT61058.1	lacF_3	A4G23_03935	A4G23_00444	Bacterial extracellular solute-binding protein.	Lactose transport system permease protein LacF.	0.439
AOT61058.1	lacF_4	A4G23_03935	A4G23_00504	Bacterial extracellular solute-binding protein.	Lactose transport system permease protein LacF.	0.944
AOT61058.1	lacF_7	A4G23_03935	A4G23_04628	Bacterial extracellular solute-binding protein.	Lactose transport system permease protein LacF.	0.439
AOT61058.1	lacG_1	A4G23_03935	A4G23_01871	Bacterial extracellular solute-binding protein.	Lactose transport system permease protein LacG.	0.423
AOT61058.1	lacG_2	A4G23_03935	A4G23_04457	Bacterial extracellular solute-binding protein.	Lactose transport system permease protein LacG.	0.423
AOT61058.1	malG	A4G23_03935	A4G23_01397	Bacterial extracellular solute-binding protein.	Maltose transport system permease protein MalG.	0.411
AOT61058.1	msmE_3	A4G23_03935	A4G23_00503	Bacterial extracellular solute-binding protein.	Multiple sugar-binding protein precursor.	0.929
AOT61058.1	msmE_5	A4G23_03935	A4G23_01993	Bacterial extracellular solute-binding protein.	Multiple sugar-binding protein precursor.	0.929
AOT61058.1	sugA_1	A4G23_03935	A4G23_00288	Bacterial extracellular solute-binding protein.	Trehalose transport system permease protein SugA.	0.439
AOT61058.1	sugB_1	A4G23_03935	A4G23_00289	Bacterial extracellular solute-binding protein.	Trehalose transport system permease protein SugB.	0.411
AOT61058.1	sugB_2	A4G23_03935	A4G23_03852	Bacterial extracellular solute-binding protein.	Trehalose transport system permease protein SugB.	0.411
AOT61058.1	sugB_3	A4G23_03935	A4G23_04629	Bacterial extracellular solute-binding protein.	Trehalose transport system permease protein SugB.	0.423
AOT61058.1	sugC_1	A4G23_03935	A4G23_00290	Bacterial extracellular solute-binding protein.	Trehalose import ATP-binding protein SugC; Belongs to the ABC transporter superfamily.	0.900