(21 nodes) Outer membrane-bounded periplasmic space network (Streptomyces rubrolavendulae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	appA	Oligopeptide-binding protein AppA precursor. (538 aa)
	AOT57636.1	Hypothetical protein. (641 aa)
	chvE	Multiple sugar-binding periplasmic receptor ChvE precursor. (368 aa)
	xylF_1	D-xylose-binding periplasmic protein precursor. (457 aa)
	ddpA_1	Putative D,D-dipeptide-binding periplasmic protein DdpA precursor. (525 aa)
	ddpA_2	Putative D,D-dipeptide-binding periplasmic protein DdpA precursor. (529 aa)
	oppA_1	Oligopeptide-binding protein OppA precursor. (533 aa)
	AOT58532.1	Hypothetical protein. (488 aa)
	lytC	N-acetylmuramoyl-L-alanine amidase LytC precursor. (343 aa)
	yfmC_1	Fe(3+)-citrate-binding protein YfmC precursor. (347 aa)
	aapJ	General L-amino acid-binding periplasmic protein AapJ precursor; Belongs to the bacterial solute-binding protein 3 family. (327 aa)
	ddpA_3	Putative D,D-dipeptide-binding periplasmic protein DdpA precursor. (519 aa)
	mppA	Periplasmic murein peptide-binding protein precursor. (600 aa)
	modA	Molybdate-binding periplasmic protein precursor. (262 aa)
	AOT61040.1	Hypothetical protein. (103 aa)
	AOT61041.1	Metallo-beta-lactamase superfamily protein. (534 aa)
	dppA_1	Periplasmic dipeptide transport protein precursor. (556 aa)
	thiB	Thiamine-binding periplasmic protein precursor. (365 aa)
	xylF_2	D-xylose-binding periplasmic protein precursor. (365 aa)
	yfmC_2	Fe(3+)-citrate-binding protein YfmC precursor. (349 aa)
	fhuD	Iron(3+)-hydroxamate-binding protein FhuD precursor. (328 aa)

Your Current Organism:

Streptomyces rubrolavendulae

NCBI taxonomy Id: 285473
Other names: S. rubrolavendulae

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AOT61040.1	AOT61041.1	A4G23_03917	A4G23_03918	Hypothetical protein.	Metallo-beta-lactamase superfamily protein.	0.946
AOT61041.1	AOT61040.1	A4G23_03918	A4G23_03917	Metallo-beta-lactamase superfamily protein.	Hypothetical protein.	0.946
appA	ddpA_1	A4G23_05292	A4G23_00607	Oligopeptide-binding protein AppA precursor.	Putative D,D-dipeptide-binding periplasmic protein DdpA precursor.	0.492
appA	ddpA_2	A4G23_05292	A4G23_00888	Oligopeptide-binding protein AppA precursor.	Putative D,D-dipeptide-binding periplasmic protein DdpA precursor.	0.514
appA	ddpA_3	A4G23_05292	A4G23_03517	Oligopeptide-binding protein AppA precursor.	Putative D,D-dipeptide-binding periplasmic protein DdpA precursor.	0.491
appA	dppA_1	A4G23_05292	A4G23_04045	Oligopeptide-binding protein AppA precursor.	Periplasmic dipeptide transport protein precursor.	0.490
appA	mppA	A4G23_05292	A4G23_03732	Oligopeptide-binding protein AppA precursor.	Periplasmic murein peptide-binding protein precursor.	0.721
appA	oppA_1	A4G23_05292	A4G23_00889	Oligopeptide-binding protein AppA precursor.	Oligopeptide-binding protein OppA precursor.	0.483
ddpA_1	appA	A4G23_00607	A4G23_05292	Putative D,D-dipeptide-binding periplasmic protein DdpA precursor.	Oligopeptide-binding protein AppA precursor.	0.492
ddpA_1	ddpA_2	A4G23_00607	A4G23_00888	Putative D,D-dipeptide-binding periplasmic protein DdpA precursor.	Putative D,D-dipeptide-binding periplasmic protein DdpA precursor.	0.405
ddpA_1	ddpA_3	A4G23_00607	A4G23_03517	Putative D,D-dipeptide-binding periplasmic protein DdpA precursor.	Putative D,D-dipeptide-binding periplasmic protein DdpA precursor.	0.421
ddpA_1	dppA_1	A4G23_00607	A4G23_04045	Putative D,D-dipeptide-binding periplasmic protein DdpA precursor.	Periplasmic dipeptide transport protein precursor.	0.431
ddpA_1	mppA	A4G23_00607	A4G23_03732	Putative D,D-dipeptide-binding periplasmic protein DdpA precursor.	Periplasmic murein peptide-binding protein precursor.	0.526
ddpA_1	oppA_1	A4G23_00607	A4G23_00889	Putative D,D-dipeptide-binding periplasmic protein DdpA precursor.	Oligopeptide-binding protein OppA precursor.	0.406
ddpA_2	appA	A4G23_00888	A4G23_05292	Putative D,D-dipeptide-binding periplasmic protein DdpA precursor.	Oligopeptide-binding protein AppA precursor.	0.514
ddpA_2	ddpA_1	A4G23_00888	A4G23_00607	Putative D,D-dipeptide-binding periplasmic protein DdpA precursor.	Putative D,D-dipeptide-binding periplasmic protein DdpA precursor.	0.405
ddpA_2	ddpA_3	A4G23_00888	A4G23_03517	Putative D,D-dipeptide-binding periplasmic protein DdpA precursor.	Putative D,D-dipeptide-binding periplasmic protein DdpA precursor.	0.434
ddpA_2	dppA_1	A4G23_00888	A4G23_04045	Putative D,D-dipeptide-binding periplasmic protein DdpA precursor.	Periplasmic dipeptide transport protein precursor.	0.421
ddpA_2	mppA	A4G23_00888	A4G23_03732	Putative D,D-dipeptide-binding periplasmic protein DdpA precursor.	Periplasmic murein peptide-binding protein precursor.	0.518
ddpA_2	oppA_1	A4G23_00888	A4G23_00889	Putative D,D-dipeptide-binding periplasmic protein DdpA precursor.	Oligopeptide-binding protein OppA precursor.	0.787