(44 nodes) Fatty acid biosynthesis network (Streptomyces luteocolor)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	GCA_001748305_02152	Unannotated protein. (239 aa)
	GCA_001748305_07623	Unannotated protein. (420 aa)
	GCA_001748305_07625	Unannotated protein. (333 aa)
	GCA_001748305_07626	Unannotated protein. (303 aa)
	GCA_001748305_07738	Unannotated protein. (246 aa)
	GCA_001748305_07745	Unannotated protein. (437 aa)
	GCA_001748305_07840	Unannotated protein. (640 aa)
	GCA_001748305_00125	Unannotated protein. (269 aa)
	GCA_001748305_04421	Unannotated protein. (640 aa)
	GCA_001748305_04356	Unannotated protein. (61 aa)
	GCA_001748305_04311	Unannotated protein. (598 aa)
	GCA_001748305_03935	Unannotated protein. (354 aa)
	GCA_001748305_03863	Unannotated protein. (603 aa)
	GCA_001748305_03760	Unannotated protein. (537 aa)
	GCA_001748305_03451	Unannotated protein. (257 aa)
	GCA_001748305_03325	Unannotated protein. (315 aa)
	GCA_001748305_03238	Unannotated protein. (264 aa)
	GCA_001748305_02898	Unannotated protein. (281 aa)
	GCA_001748305_02764	Unannotated protein. (262 aa)
	GCA_001748305_02580	Unannotated protein. (258 aa)
	GCA_001748305_06936	Unannotated protein. (260 aa)
	GCA_001748305_06768	Unannotated protein. (361 aa)
	GCA_001748305_06763	Unannotated protein. (260 aa)
	GCA_001748305_06192	Unannotated protein. (253 aa)
	GCA_001748305_05068	Unannotated protein. (323 aa)
	GCA_001748305_04981	Unannotated protein. (521 aa)
	GCA_001748305_04903	Unannotated protein. (261 aa)
	GCA_001748305_04901	Unannotated protein. (341 aa)
	GCA_001748305_04824	Unannotated protein. (445 aa)
	GCA_001748305_04500	Unannotated protein. (251 aa)
	GCA_001748305_08132	Unannotated protein. (295 aa)
	GCA_001748305_07219	Unannotated protein. (246 aa)
	GCA_001748305_07438	Unannotated protein. (608 aa)
	GCA_001748305_07523	Unannotated protein. (629 aa)
	GCA_001748305_00627	Unannotated protein. (325 aa)
	GCA_001748305_00638	Unannotated protein. (1194 aa)
	GCA_001748305_00683	Unannotated protein. (242 aa)
	GCA_001748305_00784	Unannotated protein. (246 aa)
	GCA_001748305_00812	Unannotated protein. (311 aa)
	GCA_001748305_01459	Unannotated protein. (504 aa)
	GCA_001748305_01699	Unannotated protein. (499 aa)
	GCA_001748305_01733	Unannotated protein. (317 aa)
	GCA_001748305_01860	Unannotated protein. (258 aa)
	GCA_001748305_02125	Unannotated protein. (251 aa)

Your Current Organism:

Streptomyces luteocolor

NCBI taxonomy Id: 285500
Other names: S. luteocolor

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
GCA_001748305_00125	GCA_001748305_00638	Unannotated protein.	Unannotated protein.	0.701
GCA_001748305_00125	GCA_001748305_00812	Unannotated protein.	Unannotated protein.	0.424
GCA_001748305_00125	GCA_001748305_02898	Unannotated protein.	Unannotated protein.	0.731
GCA_001748305_00125	GCA_001748305_03325	Unannotated protein.	Unannotated protein.	0.420
GCA_001748305_00125	GCA_001748305_04500	Unannotated protein.	Unannotated protein.	0.770
GCA_001748305_00125	GCA_001748305_06768	Unannotated protein.	Unannotated protein.	0.513
GCA_001748305_00125	GCA_001748305_07219	Unannotated protein.	Unannotated protein.	0.769
GCA_001748305_00125	GCA_001748305_07623	Unannotated protein.	Unannotated protein.	0.719
GCA_001748305_00125	GCA_001748305_07625	Unannotated protein.	Unannotated protein.	0.409
GCA_001748305_00125	GCA_001748305_07626	Unannotated protein.	Unannotated protein.	0.612
GCA_001748305_00627	GCA_001748305_00638	Unannotated protein.	Unannotated protein.	0.899
GCA_001748305_00627	GCA_001748305_00784	Unannotated protein.	Unannotated protein.	0.464
GCA_001748305_00627	GCA_001748305_00812	Unannotated protein.	Unannotated protein.	0.767
GCA_001748305_00627	GCA_001748305_01733	Unannotated protein.	Unannotated protein.	0.910
GCA_001748305_00627	GCA_001748305_01860	Unannotated protein.	Unannotated protein.	0.635
GCA_001748305_00627	GCA_001748305_02125	Unannotated protein.	Unannotated protein.	0.834
GCA_001748305_00627	GCA_001748305_02152	Unannotated protein.	Unannotated protein.	0.841
GCA_001748305_00627	GCA_001748305_02764	Unannotated protein.	Unannotated protein.	0.644
GCA_001748305_00627	GCA_001748305_02898	Unannotated protein.	Unannotated protein.	0.705
GCA_001748305_00627	GCA_001748305_03238	Unannotated protein.	Unannotated protein.	0.694