(16 nodes) Geraniol degradation network (Streptomyces luteocolor)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	GCA_001748305_01005	Unannotated protein. (396 aa)
	GCA_001748305_06771	Unannotated protein. (251 aa)
	GCA_001748305_07696	Unannotated protein. (710 aa)
	GCA_001748305_07697	Unannotated protein. (408 aa)
	GCA_001748305_08126	Unannotated protein. (265 aa)
	GCA_001748305_00326	Unannotated protein. (314 aa)
	GCA_001748305_01885	Unannotated protein. (254 aa)
	GCA_001748305_02118	Unannotated protein. (267 aa)
	GCA_001748305_02844	Unannotated protein. (324 aa)
	GCA_001748305_02914	Unannotated protein. (357 aa)
	GCA_001748305_03860	Unannotated protein. (723 aa)
	GCA_001748305_05091	Unannotated protein. (244 aa)
	GCA_001748305_05332	Unannotated protein. (364 aa)
	GCA_001748305_06176	Unannotated protein. (142 aa)
	GCA_001748305_04179	Unannotated protein. (427 aa)
	GCA_001748305_04970	Unannotated protein. (266 aa)

Your Current Organism:

Streptomyces luteocolor

NCBI taxonomy Id: 285500
Other names: S. luteocolor

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
GCA_001748305_00326	GCA_001748305_02844	Unannotated protein.	Unannotated protein.	0.486
GCA_001748305_00326	GCA_001748305_03860	Unannotated protein.	Unannotated protein.	0.559
GCA_001748305_00326	GCA_001748305_07696	Unannotated protein.	Unannotated protein.	0.559
GCA_001748305_01005	GCA_001748305_01885	Unannotated protein.	Unannotated protein.	0.826
GCA_001748305_01005	GCA_001748305_02118	Unannotated protein.	Unannotated protein.	0.786
GCA_001748305_01005	GCA_001748305_02844	Unannotated protein.	Unannotated protein.	0.830
GCA_001748305_01005	GCA_001748305_02914	Unannotated protein.	Unannotated protein.	0.786
GCA_001748305_01005	GCA_001748305_03860	Unannotated protein.	Unannotated protein.	0.995
GCA_001748305_01005	GCA_001748305_04970	Unannotated protein.	Unannotated protein.	0.786
GCA_001748305_01005	GCA_001748305_05091	Unannotated protein.	Unannotated protein.	0.786
GCA_001748305_01005	GCA_001748305_05332	Unannotated protein.	Unannotated protein.	0.786
GCA_001748305_01005	GCA_001748305_06176	Unannotated protein.	Unannotated protein.	0.786
GCA_001748305_01005	GCA_001748305_06771	Unannotated protein.	Unannotated protein.	0.843
GCA_001748305_01005	GCA_001748305_07696	Unannotated protein.	Unannotated protein.	0.994
GCA_001748305_01005	GCA_001748305_08126	Unannotated protein.	Unannotated protein.	0.786
GCA_001748305_01885	GCA_001748305_01005	Unannotated protein.	Unannotated protein.	0.826
GCA_001748305_01885	GCA_001748305_02844	Unannotated protein.	Unannotated protein.	0.630
GCA_001748305_01885	GCA_001748305_02914	Unannotated protein.	Unannotated protein.	0.688
GCA_001748305_01885	GCA_001748305_03860	Unannotated protein.	Unannotated protein.	0.858
GCA_001748305_01885	GCA_001748305_04179	Unannotated protein.	Unannotated protein.	0.822