(64 nodes) Phenylalanine metabolism network (Streptomyces luteocolor)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	GCA_001748305_05204	Unannotated protein. (525 aa)
	GCA_001748305_00365	Unannotated protein. (304 aa)
	GCA_001748305_00380	Unannotated protein. (405 aa)
	GCA_001748305_00506	Unannotated protein. (344 aa)
	GCA_001748305_00558	Unannotated protein. (741 aa)
	GCA_001748305_00993	Unannotated protein. (107 aa)
	GCA_001748305_00994	Unannotated protein. (414 aa)
	GCA_001748305_01042	Unannotated protein. (646 aa)
	GCA_001748305_01308	Unannotated protein. (310 aa)
	GCA_001748305_01320	Unannotated protein. (359 aa)
	GCA_001748305_01350	Unannotated protein. (483 aa)
	GCA_001748305_01695	Unannotated protein. (291 aa)
	GCA_001748305_01754	Unannotated protein. (427 aa)
	GCA_001748305_01885	Unannotated protein. (254 aa)
	GCA_001748305_01927	Unannotated protein. (105 aa)
	GCA_001748305_01931	Unannotated protein. (112 aa)
	GCA_001748305_02100	Unannotated protein. (495 aa)
	GCA_001748305_02118	Unannotated protein. (267 aa)
	GCA_001748305_02290	Unannotated protein. (426 aa)
	GCA_001748305_02376	Unannotated protein. (368 aa)
	GCA_001748305_02591	Unannotated protein. (545 aa)
	GCA_001748305_02654	Unannotated protein. (263 aa)
	GCA_001748305_02655	Unannotated protein. (437 aa)
	GCA_001748305_02914	Unannotated protein. (357 aa)
	GCA_001748305_03286	Unannotated protein. (371 aa)
	GCA_001748305_03513	Unannotated protein. (266 aa)
	GCA_001748305_03655	Unannotated protein. (503 aa)
	GCA_001748305_03660	Unannotated protein. (336 aa)
	GCA_001748305_03661	Unannotated protein. (96 aa)
	GCA_001748305_03662	Unannotated protein. (248 aa)
	GCA_001748305_03663	Unannotated protein. (166 aa)
	GCA_001748305_03664	Unannotated protein. (359 aa)
	GCA_001748305_03783	Unannotated protein. (73 aa)
	GCA_001748305_03788	Unannotated protein. (593 aa)
	GCA_001748305_03880	Unannotated protein. (250 aa)
	GCA_001748305_03928	Unannotated protein. (366 aa)
	GCA_001748305_03964	Unannotated protein. (504 aa)
	GCA_001748305_04040	Unannotated protein. (312 aa)
	GCA_001748305_04095	Unannotated protein. (275 aa)
	GCA_001748305_04361	Unannotated protein. (550 aa)
	GCA_001748305_04417	Unannotated protein. (476 aa)
	GCA_001748305_04926	Unannotated protein. (483 aa)
	GCA_001748305_04970	Unannotated protein. (266 aa)
	GCA_001748305_04976	Unannotated protein. (430 aa)
	GCA_001748305_05091	Unannotated protein. (244 aa)
	GCA_001748305_05129	Unannotated protein. (382 aa)
	GCA_001748305_05203	Unannotated protein. (516 aa)
	GCA_001748305_05332	Unannotated protein. (364 aa)
	GCA_001748305_05339	Unannotated protein. (301 aa)
	GCA_001748305_05378	Unannotated protein. (282 aa)
	GCA_001748305_05660	Unannotated protein. (286 aa)
	GCA_001748305_05745	Unannotated protein. (300 aa)
	GCA_001748305_05819	Unannotated protein. (530 aa)
	GCA_001748305_05959	Unannotated protein. (408 aa)
	GCA_001748305_06176	Unannotated protein. (142 aa)
	GCA_001748305_06351	Unannotated protein. (248 aa)
	GCA_001748305_06491	Unannotated protein. (147 aa)
	GCA_001748305_06771	Unannotated protein. (251 aa)
	GCA_001748305_07183	Unannotated protein. (400 aa)
	GCA_001748305_07383	Unannotated protein. (420 aa)
	GCA_001748305_07996	Unannotated protein. (312 aa)
	GCA_001748305_08069	Unannotated protein. (259 aa)
	GCA_001748305_08126	Unannotated protein. (265 aa)
	GCA_001748305_08127	Unannotated protein. (279 aa)

Your Current Organism:

Streptomyces luteocolor

NCBI taxonomy Id: 285500
Other names: S. luteocolor

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
GCA_001748305_00365	GCA_001748305_01931	Unannotated protein.	Unannotated protein.	0.627
GCA_001748305_00365	GCA_001748305_03661	Unannotated protein.	Unannotated protein.	0.938
GCA_001748305_00365	GCA_001748305_03663	Unannotated protein.	Unannotated protein.	0.627
GCA_001748305_00365	GCA_001748305_03664	Unannotated protein.	Unannotated protein.	0.880
GCA_001748305_00380	GCA_001748305_01308	Unannotated protein.	Unannotated protein.	0.517
GCA_001748305_00380	GCA_001748305_01350	Unannotated protein.	Unannotated protein.	0.889
GCA_001748305_00380	GCA_001748305_01931	Unannotated protein.	Unannotated protein.	0.466
GCA_001748305_00380	GCA_001748305_03660	Unannotated protein.	Unannotated protein.	0.904
GCA_001748305_00380	GCA_001748305_03661	Unannotated protein.	Unannotated protein.	0.913
GCA_001748305_00380	GCA_001748305_03662	Unannotated protein.	Unannotated protein.	0.904
GCA_001748305_00380	GCA_001748305_03663	Unannotated protein.	Unannotated protein.	0.907
GCA_001748305_00380	GCA_001748305_03664	Unannotated protein.	Unannotated protein.	0.900
GCA_001748305_00380	GCA_001748305_04361	Unannotated protein.	Unannotated protein.	0.885
GCA_001748305_00380	GCA_001748305_04417	Unannotated protein.	Unannotated protein.	0.806
GCA_001748305_00380	GCA_001748305_04926	Unannotated protein.	Unannotated protein.	0.806
GCA_001748305_00380	GCA_001748305_05339	Unannotated protein.	Unannotated protein.	0.498
GCA_001748305_00380	GCA_001748305_06351	Unannotated protein.	Unannotated protein.	0.423
GCA_001748305_00380	GCA_001748305_06491	Unannotated protein.	Unannotated protein.	0.566
GCA_001748305_00506	GCA_001748305_01350	Unannotated protein.	Unannotated protein.	0.625
GCA_001748305_00506	GCA_001748305_04361	Unannotated protein.	Unannotated protein.	0.637