(75 nodes) Benzoate degradation network (Streptomyces luteocolor)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	GCA_001748305_06775	Unannotated protein. (379 aa)
	GCA_001748305_00476	Unannotated protein. (277 aa)
	GCA_001748305_00582	Unannotated protein. (262 aa)
	GCA_001748305_00654	Unannotated protein. (157 aa)
	GCA_001748305_00691	Unannotated protein. (157 aa)
	GCA_001748305_00842	Unannotated protein. (256 aa)
	GCA_001748305_01005	Unannotated protein. (396 aa)
	GCA_001748305_01061	Unannotated protein. (174 aa)
	GCA_001748305_01121	Unannotated protein. (232 aa)
	GCA_001748305_01186	Unannotated protein. (395 aa)
	GCA_001748305_01194	Unannotated protein. (406 aa)
	GCA_001748305_01286	Unannotated protein. (179 aa)
	GCA_001748305_01412	Unannotated protein. (236 aa)
	GCA_001748305_01815	Unannotated protein. (234 aa)
	GCA_001748305_01854	Unannotated protein. (223 aa)
	GCA_001748305_01863	Unannotated protein. (256 aa)
	GCA_001748305_01865	Unannotated protein. (301 aa)
	GCA_001748305_01885	Unannotated protein. (254 aa)
	GCA_001748305_02118	Unannotated protein. (267 aa)
	GCA_001748305_02155	Unannotated protein. (231 aa)
	GCA_001748305_02637	Unannotated protein. (288 aa)
	GCA_001748305_02735	Unannotated protein. (215 aa)
	GCA_001748305_02914	Unannotated protein. (357 aa)
	GCA_001748305_03163	Unannotated protein. (129 aa)
	GCA_001748305_03197	Unannotated protein. (251 aa)
	GCA_001748305_03262	Unannotated protein. (157 aa)
	GCA_001748305_03531	Unannotated protein. (315 aa)
	GCA_001748305_03583	Unannotated protein. (223 aa)
	GCA_001748305_03655	Unannotated protein. (503 aa)
	GCA_001748305_03788	Unannotated protein. (593 aa)
	GCA_001748305_03859	Unannotated protein. (404 aa)
	GCA_001748305_03860	Unannotated protein. (723 aa)
	GCA_001748305_03867	Unannotated protein. (264 aa)
	GCA_001748305_03910	Unannotated protein. (60 aa)
	GCA_001748305_03934	Unannotated protein. (61 aa)
	GCA_001748305_03978	Unannotated protein. (399 aa)
	GCA_001748305_04152	Unannotated protein. (389 aa)
	GCA_001748305_04179	Unannotated protein. (427 aa)
	GCA_001748305_04689	Unannotated protein. (193 aa)
	GCA_001748305_04690	Unannotated protein. (148 aa)
	GCA_001748305_04727	Unannotated protein. (193 aa)
	GCA_001748305_04967	Unannotated protein. (400 aa)
	GCA_001748305_04968	Unannotated protein. (359 aa)
	GCA_001748305_04970	Unannotated protein. (266 aa)
	GCA_001748305_05091	Unannotated protein. (244 aa)
	GCA_001748305_05118	Unannotated protein. (521 aa)
	GCA_001748305_05332	Unannotated protein. (364 aa)
	GCA_001748305_05378	Unannotated protein. (282 aa)
	GCA_001748305_05554	Unannotated protein. (168 aa)
	GCA_001748305_05626	Unannotated protein. (395 aa)
	GCA_001748305_05660	Unannotated protein. (286 aa)
	GCA_001748305_05682	Unannotated protein. (161 aa)
	GCA_001748305_06176	Unannotated protein. (142 aa)
	GCA_001748305_06238	Unannotated protein. (398 aa)
	GCA_001748305_06346	Unannotated protein. (330 aa)
	GCA_001748305_06502	Unannotated protein. (389 aa)
	GCA_001748305_06567	Unannotated protein. (163 aa)
	GCA_001748305_06703	Unannotated protein. (176 aa)
	GCA_001748305_06765	Unannotated protein. (385 aa)
	GCA_001748305_06771	Unannotated protein. (251 aa)
	GCA_001748305_06776	Unannotated protein. (547 aa)
	GCA_001748305_06777	Unannotated protein. (185 aa)
	GCA_001748305_06778	Unannotated protein. (275 aa)
	GCA_001748305_07037	Unannotated protein. (388 aa)
	GCA_001748305_07045	Unannotated protein. (237 aa)
	GCA_001748305_07100	Unannotated protein. (261 aa)
	GCA_001748305_07166	Unannotated protein. (400 aa)
	GCA_001748305_07497	Unannotated protein. (394 aa)
	GCA_001748305_07651	Unannotated protein. (249 aa)
	GCA_001748305_07696	Unannotated protein. (710 aa)
	GCA_001748305_07697	Unannotated protein. (408 aa)
	GCA_001748305_07744	Unannotated protein. (425 aa)
	GCA_001748305_07996	Unannotated protein. (312 aa)
	GCA_001748305_08126	Unannotated protein. (265 aa)
	GCA_001748305_08129	Unannotated protein. (382 aa)

Your Current Organism:

Streptomyces luteocolor

NCBI taxonomy Id: 285500
Other names: S. luteocolor

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
GCA_001748305_00654	GCA_001748305_03978	Unannotated protein.	Unannotated protein.	0.669
GCA_001748305_00654	GCA_001748305_06775	Unannotated protein.	Unannotated protein.	0.669
GCA_001748305_00691	GCA_001748305_03978	Unannotated protein.	Unannotated protein.	0.621
GCA_001748305_00691	GCA_001748305_06567	Unannotated protein.	Unannotated protein.	0.471
GCA_001748305_00691	GCA_001748305_06775	Unannotated protein.	Unannotated protein.	0.621
GCA_001748305_01005	GCA_001748305_01885	Unannotated protein.	Unannotated protein.	0.826
GCA_001748305_01005	GCA_001748305_02118	Unannotated protein.	Unannotated protein.	0.786
GCA_001748305_01005	GCA_001748305_02914	Unannotated protein.	Unannotated protein.	0.786
GCA_001748305_01005	GCA_001748305_03655	Unannotated protein.	Unannotated protein.	0.848
GCA_001748305_01005	GCA_001748305_03788	Unannotated protein.	Unannotated protein.	0.848
GCA_001748305_01005	GCA_001748305_03860	Unannotated protein.	Unannotated protein.	0.995
GCA_001748305_01005	GCA_001748305_03978	Unannotated protein.	Unannotated protein.	0.430
GCA_001748305_01005	GCA_001748305_04967	Unannotated protein.	Unannotated protein.	0.859
GCA_001748305_01005	GCA_001748305_04968	Unannotated protein.	Unannotated protein.	0.706
GCA_001748305_01005	GCA_001748305_04970	Unannotated protein.	Unannotated protein.	0.786
GCA_001748305_01005	GCA_001748305_05091	Unannotated protein.	Unannotated protein.	0.786
GCA_001748305_01005	GCA_001748305_05332	Unannotated protein.	Unannotated protein.	0.786
GCA_001748305_01005	GCA_001748305_05378	Unannotated protein.	Unannotated protein.	0.848
GCA_001748305_01005	GCA_001748305_05660	Unannotated protein.	Unannotated protein.	0.848
GCA_001748305_01005	GCA_001748305_06176	Unannotated protein.	Unannotated protein.	0.786