(59 nodes) Tryptophan metabolism network (Streptomyces luteocolor)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	GCA_001748305_01350	Unannotated protein. (483 aa)
	GCA_001748305_01194	Unannotated protein. (406 aa)
	GCA_001748305_01069	Unannotated protein. (456 aa)
	GCA_001748305_01042	Unannotated protein. (646 aa)
	GCA_001748305_00897	Unannotated protein. (133 aa)
	GCA_001748305_00617	Unannotated protein. (509 aa)
	GCA_001748305_00558	Unannotated protein. (741 aa)
	GCA_001748305_00506	Unannotated protein. (344 aa)
	GCA_001748305_01741	Unannotated protein. (135 aa)
	GCA_001748305_01769	Unannotated protein. (386 aa)
	GCA_001748305_01772	Unannotated protein. (462 aa)
	GCA_001748305_01885	Unannotated protein. (254 aa)
	GCA_001748305_02033	Unannotated protein. (236 aa)
	GCA_001748305_02118	Unannotated protein. (267 aa)
	GCA_001748305_02381	Unannotated protein. (132 aa)
	GCA_001748305_02472	Unannotated protein. (136 aa)
	GCA_001748305_02643	Unannotated protein. (634 aa)
	GCA_001748305_02914	Unannotated protein. (357 aa)
	GCA_001748305_03028	Unannotated protein. (175 aa)
	GCA_001748305_03189	Unannotated protein. (1070 aa)
	GCA_001748305_03480	Unannotated protein. (497 aa)
	GCA_001748305_03785	Unannotated protein. (138 aa)
	GCA_001748305_03804	Unannotated protein. (485 aa)
	GCA_001748305_03860	Unannotated protein. (723 aa)
	GCA_001748305_03964	Unannotated protein. (504 aa)
	GCA_001748305_04090	Unannotated protein. (133 aa)
	GCA_001748305_04152	Unannotated protein. (389 aa)
	GCA_001748305_04160	Unannotated protein. (488 aa)
	GCA_001748305_04197	Unannotated protein. (224 aa)
	GCA_001748305_04361	Unannotated protein. (550 aa)
	GCA_001748305_04417	Unannotated protein. (476 aa)
	GCA_001748305_04420	Unannotated protein. (474 aa)
	GCA_001748305_04625	Unannotated protein. (489 aa)
	GCA_001748305_04926	Unannotated protein. (483 aa)
	GCA_001748305_04967	Unannotated protein. (400 aa)
	GCA_001748305_04970	Unannotated protein. (266 aa)
	GCA_001748305_04973	Unannotated protein. (147 aa)
	GCA_001748305_05013	Unannotated protein. (406 aa)
	GCA_001748305_05014	Unannotated protein. (297 aa)
	GCA_001748305_05091	Unannotated protein. (244 aa)
	GCA_001748305_05122	Unannotated protein. (316 aa)
	GCA_001748305_05203	Unannotated protein. (516 aa)
	GCA_001748305_05301	Unannotated protein. (698 aa)
	GCA_001748305_05332	Unannotated protein. (364 aa)
	GCA_001748305_06176	Unannotated protein. (142 aa)
	GCA_001748305_06238	Unannotated protein. (398 aa)
	GCA_001748305_06338	Unannotated protein. (409 aa)
	GCA_001748305_06582	Unannotated protein. (409 aa)
	GCA_001748305_06680	Unannotated protein. (476 aa)
	GCA_001748305_06771	Unannotated protein. (251 aa)
	GCA_001748305_07166	Unannotated protein. (400 aa)
	GCA_001748305_07617	Unannotated protein. (133 aa)
	GCA_001748305_07667	Unannotated protein. (304 aa)
	GCA_001748305_07696	Unannotated protein. (710 aa)
	GCA_001748305_07732	Unannotated protein. (142 aa)
	GCA_001748305_07744	Unannotated protein. (425 aa)
	GCA_001748305_07754	Unannotated protein. (481 aa)
	GCA_001748305_07788	Unannotated protein. (462 aa)
	GCA_001748305_08126	Unannotated protein. (265 aa)

Your Current Organism:

Streptomyces luteocolor

NCBI taxonomy Id: 285500
Other names: S. luteocolor

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
GCA_001748305_00506	GCA_001748305_01350	Unannotated protein.	Unannotated protein.	0.625
GCA_001748305_00506	GCA_001748305_04361	Unannotated protein.	Unannotated protein.	0.637
GCA_001748305_00506	GCA_001748305_04417	Unannotated protein.	Unannotated protein.	0.637
GCA_001748305_00506	GCA_001748305_04926	Unannotated protein.	Unannotated protein.	0.637
GCA_001748305_00506	GCA_001748305_05122	Unannotated protein.	Unannotated protein.	0.665
GCA_001748305_00558	GCA_001748305_03804	Unannotated protein.	Unannotated protein.	0.866
GCA_001748305_00558	GCA_001748305_03964	Unannotated protein.	Unannotated protein.	0.888
GCA_001748305_00558	GCA_001748305_04625	Unannotated protein.	Unannotated protein.	0.866
GCA_001748305_00558	GCA_001748305_05203	Unannotated protein.	Unannotated protein.	0.774
GCA_001748305_00558	GCA_001748305_05301	Unannotated protein.	Unannotated protein.	0.930
GCA_001748305_00617	GCA_001748305_01042	Unannotated protein.	Unannotated protein.	0.889
GCA_001748305_00617	GCA_001748305_03189	Unannotated protein.	Unannotated protein.	0.824
GCA_001748305_00617	GCA_001748305_03860	Unannotated protein.	Unannotated protein.	0.905
GCA_001748305_00617	GCA_001748305_05301	Unannotated protein.	Unannotated protein.	0.499
GCA_001748305_00617	GCA_001748305_07696	Unannotated protein.	Unannotated protein.	0.407
GCA_001748305_01042	GCA_001748305_00617	Unannotated protein.	Unannotated protein.	0.889
GCA_001748305_01042	GCA_001748305_01350	Unannotated protein.	Unannotated protein.	0.453
GCA_001748305_01042	GCA_001748305_01772	Unannotated protein.	Unannotated protein.	0.809
GCA_001748305_01042	GCA_001748305_03964	Unannotated protein.	Unannotated protein.	0.900
GCA_001748305_01042	GCA_001748305_04160	Unannotated protein.	Unannotated protein.	0.809