(61 nodes) Propanoate metabolism network (Streptomyces luteocolor)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	GCA_001748305_04420	Unannotated protein. (474 aa)
	GCA_001748305_00349	Unannotated protein. (124 aa)
	GCA_001748305_01051	Unannotated protein. (353 aa)
	GCA_001748305_01069	Unannotated protein. (456 aa)
	GCA_001748305_01194	Unannotated protein. (406 aa)
	GCA_001748305_01296	Unannotated protein. (413 aa)
	GCA_001748305_01880	Unannotated protein. (349 aa)
	GCA_001748305_01885	Unannotated protein. (254 aa)
	GCA_001748305_02033	Unannotated protein. (236 aa)
	GCA_001748305_02118	Unannotated protein. (267 aa)
	GCA_001748305_02131	Unannotated protein. (265 aa)
	GCA_001748305_02208	Unannotated protein. (694 aa)
	GCA_001748305_02209	Unannotated protein. (405 aa)
	GCA_001748305_02221	Unannotated protein. (566 aa)
	GCA_001748305_02845	Unannotated protein. (656 aa)
	GCA_001748305_02914	Unannotated protein. (357 aa)
	GCA_001748305_02916	Unannotated protein. (733 aa)
	GCA_001748305_02917	Unannotated protein. (616 aa)
	GCA_001748305_03065	Unannotated protein. (957 aa)
	GCA_001748305_03166	Unannotated protein. (530 aa)
	GCA_001748305_03221	Unannotated protein. (953 aa)
	GCA_001748305_03299	Unannotated protein. (292 aa)
	GCA_001748305_03300	Unannotated protein. (376 aa)
	GCA_001748305_03303	Unannotated protein. (717 aa)
	GCA_001748305_03860	Unannotated protein. (723 aa)
	GCA_001748305_03908	Unannotated protein. (596 aa)
	GCA_001748305_04005	Unannotated protein. (427 aa)
	GCA_001748305_04152	Unannotated protein. (389 aa)
	GCA_001748305_04232	Unannotated protein. (415 aa)
	GCA_001748305_04478	Unannotated protein. (897 aa)
	GCA_001748305_04715	Unannotated protein. (526 aa)
	GCA_001748305_04824	Unannotated protein. (445 aa)
	GCA_001748305_04843	Unannotated protein. (444 aa)
	GCA_001748305_04967	Unannotated protein. (400 aa)
	GCA_001748305_04970	Unannotated protein. (266 aa)
	GCA_001748305_05089	Unannotated protein. (635 aa)
	GCA_001748305_05091	Unannotated protein. (244 aa)
	GCA_001748305_05330	Unannotated protein. (499 aa)
	GCA_001748305_05332	Unannotated protein. (364 aa)
	GCA_001748305_05463	Unannotated protein. (652 aa)
	GCA_001748305_05928	Unannotated protein. (500 aa)
	GCA_001748305_05998	Unannotated protein. (68 aa)
	GCA_001748305_06176	Unannotated protein. (142 aa)
	GCA_001748305_06532	Unannotated protein. (136 aa)
	GCA_001748305_06543	Unannotated protein. (392 aa)
	GCA_001748305_06544	Unannotated protein. (294 aa)
	GCA_001748305_06636	Unannotated protein. (747 aa)
	GCA_001748305_06663	Unannotated protein. (525 aa)
	GCA_001748305_06668	Unannotated protein. (591 aa)
	GCA_001748305_06771	Unannotated protein. (251 aa)
	GCA_001748305_07166	Unannotated protein. (400 aa)
	GCA_001748305_07167	Unannotated protein. (146 aa)
	GCA_001748305_07174	Unannotated protein. (80 aa)
	GCA_001748305_07229	Unannotated protein. (351 aa)
	GCA_001748305_07233	Unannotated protein. (313 aa)
	GCA_001748305_07491	Unannotated protein. (744 aa)
	GCA_001748305_07696	Unannotated protein. (710 aa)
	GCA_001748305_07744	Unannotated protein. (425 aa)
	GCA_001748305_07788	Unannotated protein. (462 aa)
	GCA_001748305_07896	Unannotated protein. (347 aa)
	GCA_001748305_08126	Unannotated protein. (265 aa)

Your Current Organism:

Streptomyces luteocolor

NCBI taxonomy Id: 285500
Other names: S. luteocolor

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
GCA_001748305_00349	GCA_001748305_05463	Unannotated protein.	Unannotated protein.	0.467
GCA_001748305_01069	GCA_001748305_02033	Unannotated protein.	Unannotated protein.	0.693
GCA_001748305_01069	GCA_001748305_02208	Unannotated protein.	Unannotated protein.	0.827
GCA_001748305_01069	GCA_001748305_03299	Unannotated protein.	Unannotated protein.	0.806
GCA_001748305_01069	GCA_001748305_03300	Unannotated protein.	Unannotated protein.	0.820
GCA_001748305_01069	GCA_001748305_06543	Unannotated protein.	Unannotated protein.	0.820
GCA_001748305_01069	GCA_001748305_06544	Unannotated protein.	Unannotated protein.	0.806
GCA_001748305_01069	GCA_001748305_07788	Unannotated protein.	Unannotated protein.	0.718
GCA_001748305_01194	GCA_001748305_01885	Unannotated protein.	Unannotated protein.	0.786
GCA_001748305_01194	GCA_001748305_02118	Unannotated protein.	Unannotated protein.	0.786
GCA_001748305_01194	GCA_001748305_02208	Unannotated protein.	Unannotated protein.	0.916
GCA_001748305_01194	GCA_001748305_02845	Unannotated protein.	Unannotated protein.	0.787
GCA_001748305_01194	GCA_001748305_02914	Unannotated protein.	Unannotated protein.	0.786
GCA_001748305_01194	GCA_001748305_03065	Unannotated protein.	Unannotated protein.	0.552
GCA_001748305_01194	GCA_001748305_03166	Unannotated protein.	Unannotated protein.	0.421
GCA_001748305_01194	GCA_001748305_03221	Unannotated protein.	Unannotated protein.	0.659
GCA_001748305_01194	GCA_001748305_03299	Unannotated protein.	Unannotated protein.	0.828
GCA_001748305_01194	GCA_001748305_03300	Unannotated protein.	Unannotated protein.	0.896
GCA_001748305_01194	GCA_001748305_03860	Unannotated protein.	Unannotated protein.	0.997
GCA_001748305_01194	GCA_001748305_03908	Unannotated protein.	Unannotated protein.	0.916