(73 nodes) Butanoate metabolism network (Streptomyces luteocolor)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	GCA_001748305_00325	Unannotated protein. (277 aa)
	GCA_001748305_00358	Unannotated protein. (273 aa)
	GCA_001748305_01010	Unannotated protein. (661 aa)
	GCA_001748305_01051	Unannotated protein. (353 aa)
	GCA_001748305_01194	Unannotated protein. (406 aa)
	GCA_001748305_01296	Unannotated protein. (413 aa)
	GCA_001748305_01456	Unannotated protein. (223 aa)
	GCA_001748305_01457	Unannotated protein. (649 aa)
	GCA_001748305_01458	Unannotated protein. (248 aa)
	GCA_001748305_01704	Unannotated protein. (433 aa)
	GCA_001748305_01859	Unannotated protein. (542 aa)
	GCA_001748305_01885	Unannotated protein. (254 aa)
	GCA_001748305_02060	Unannotated protein. (331 aa)
	GCA_001748305_02118	Unannotated protein. (267 aa)
	GCA_001748305_02163	Unannotated protein. (255 aa)
	GCA_001748305_02297	Unannotated protein. (142 aa)
	GCA_001748305_02327	Unannotated protein. (643 aa)
	GCA_001748305_02328	Unannotated protein. (363 aa)
	GCA_001748305_02549	Unannotated protein. (458 aa)
	GCA_001748305_02723	Unannotated protein. (351 aa)
	GCA_001748305_02795	Unannotated protein. (277 aa)
	GCA_001748305_02796	Unannotated protein. (245 aa)
	GCA_001748305_02844	Unannotated protein. (324 aa)
	GCA_001748305_02914	Unannotated protein. (357 aa)
	GCA_001748305_03008	Unannotated protein. (638 aa)
	GCA_001748305_03009	Unannotated protein. (175 aa)
	GCA_001748305_03205	Unannotated protein. (467 aa)
	GCA_001748305_03281	Unannotated protein. (251 aa)
	GCA_001748305_03301	Unannotated protein. (561 aa)
	GCA_001748305_03442	Unannotated protein. (351 aa)
	GCA_001748305_03469	Unannotated protein. (262 aa)
	GCA_001748305_03555	Unannotated protein. (649 aa)
	GCA_001748305_03556	Unannotated protein. (256 aa)
	GCA_001748305_03655	Unannotated protein. (503 aa)
	GCA_001748305_03788	Unannotated protein. (593 aa)
	GCA_001748305_03790	Unannotated protein. (445 aa)
	GCA_001748305_03860	Unannotated protein. (723 aa)
	GCA_001748305_04005	Unannotated protein. (427 aa)
	GCA_001748305_04125	Unannotated protein. (927 aa)
	GCA_001748305_04152	Unannotated protein. (389 aa)
	GCA_001748305_04232	Unannotated protein. (415 aa)
	GCA_001748305_04843	Unannotated protein. (444 aa)
	GCA_001748305_04967	Unannotated protein. (400 aa)
	GCA_001748305_04970	Unannotated protein. (266 aa)
	GCA_001748305_05091	Unannotated protein. (244 aa)
	GCA_001748305_05312	Unannotated protein. (250 aa)
	GCA_001748305_05332	Unannotated protein. (364 aa)
	GCA_001748305_05378	Unannotated protein. (282 aa)
	GCA_001748305_05660	Unannotated protein. (286 aa)
	GCA_001748305_05851	Unannotated protein. (871 aa)
	GCA_001748305_06176	Unannotated protein. (142 aa)
	GCA_001748305_06193	Unannotated protein. (251 aa)
	GCA_001748305_06530	Unannotated protein. (538 aa)
	GCA_001748305_06636	Unannotated protein. (747 aa)
	GCA_001748305_06769	Unannotated protein. (263 aa)
	GCA_001748305_06770	Unannotated protein. (306 aa)
	GCA_001748305_06771	Unannotated protein. (251 aa)
	GCA_001748305_06779	Unannotated protein. (215 aa)
	GCA_001748305_06780	Unannotated protein. (272 aa)
	GCA_001748305_06782	Unannotated protein. (330 aa)
	GCA_001748305_07166	Unannotated protein. (400 aa)
	GCA_001748305_07229	Unannotated protein. (351 aa)
	GCA_001748305_07549	Unannotated protein. (126 aa)
	GCA_001748305_07550	Unannotated protein. (163 aa)
	GCA_001748305_07551	Unannotated protein. (584 aa)
	GCA_001748305_07552	Unannotated protein. (255 aa)
	GCA_001748305_07598	Unannotated protein. (364 aa)
	GCA_001748305_07661	Unannotated protein. (267 aa)
	GCA_001748305_07696	Unannotated protein. (710 aa)
	GCA_001748305_07700	Unannotated protein. (562 aa)
	GCA_001748305_07744	Unannotated protein. (425 aa)
	GCA_001748305_07996	Unannotated protein. (312 aa)
	GCA_001748305_08126	Unannotated protein. (265 aa)

Your Current Organism:

Streptomyces luteocolor

NCBI taxonomy Id: 285500
Other names: S. luteocolor

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
GCA_001748305_00325	GCA_001748305_01010	Unannotated protein.	Unannotated protein.	0.536
GCA_001748305_00325	GCA_001748305_01194	Unannotated protein.	Unannotated protein.	0.786
GCA_001748305_00325	GCA_001748305_02327	Unannotated protein.	Unannotated protein.	0.639
GCA_001748305_00325	GCA_001748305_02844	Unannotated protein.	Unannotated protein.	0.630
GCA_001748305_00325	GCA_001748305_02914	Unannotated protein.	Unannotated protein.	0.411
GCA_001748305_00325	GCA_001748305_03655	Unannotated protein.	Unannotated protein.	0.732
GCA_001748305_00325	GCA_001748305_03788	Unannotated protein.	Unannotated protein.	0.697
GCA_001748305_00325	GCA_001748305_03860	Unannotated protein.	Unannotated protein.	0.809
GCA_001748305_00325	GCA_001748305_04152	Unannotated protein.	Unannotated protein.	0.786
GCA_001748305_00325	GCA_001748305_04967	Unannotated protein.	Unannotated protein.	0.786
GCA_001748305_00325	GCA_001748305_05332	Unannotated protein.	Unannotated protein.	0.405
GCA_001748305_00325	GCA_001748305_05378	Unannotated protein.	Unannotated protein.	0.846
GCA_001748305_00325	GCA_001748305_05660	Unannotated protein.	Unannotated protein.	0.802
GCA_001748305_00325	GCA_001748305_05851	Unannotated protein.	Unannotated protein.	0.595
GCA_001748305_00325	GCA_001748305_06769	Unannotated protein.	Unannotated protein.	0.622
GCA_001748305_00325	GCA_001748305_06770	Unannotated protein.	Unannotated protein.	0.625
GCA_001748305_00325	GCA_001748305_06779	Unannotated protein.	Unannotated protein.	0.485
GCA_001748305_00325	GCA_001748305_06780	Unannotated protein.	Unannotated protein.	0.475
GCA_001748305_00325	GCA_001748305_07166	Unannotated protein.	Unannotated protein.	0.786
GCA_001748305_00325	GCA_001748305_07696	Unannotated protein.	Unannotated protein.	0.672