(24 nodes) Limonene and pinene degradation network (Streptomyces luteocolor)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	GCA_001748305_01066	Unannotated protein. (332 aa)
	GCA_001748305_08126	Unannotated protein. (265 aa)
	GCA_001748305_07754	Unannotated protein. (481 aa)
	GCA_001748305_07696	Unannotated protein. (710 aa)
	GCA_001748305_07578	Unannotated protein. (328 aa)
	GCA_001748305_06771	Unannotated protein. (251 aa)
	GCA_001748305_06680	Unannotated protein. (476 aa)
	GCA_001748305_06176	Unannotated protein. (142 aa)
	GCA_001748305_05332	Unannotated protein. (364 aa)
	GCA_001748305_05231	Unannotated protein. (416 aa)
	GCA_001748305_05091	Unannotated protein. (244 aa)
	GCA_001748305_05012	Unannotated protein. (293 aa)
	GCA_001748305_04970	Unannotated protein. (266 aa)
	GCA_001748305_04160	Unannotated protein. (488 aa)
	GCA_001748305_03860	Unannotated protein. (723 aa)
	GCA_001748305_03263	Unannotated protein. (354 aa)
	GCA_001748305_02914	Unannotated protein. (357 aa)
	GCA_001748305_02118	Unannotated protein. (267 aa)
	GCA_001748305_01885	Unannotated protein. (254 aa)
	GCA_001748305_01772	Unannotated protein. (462 aa)
	GCA_001748305_01214	Unannotated protein. (295 aa)
	GCA_001748305_01054	Unannotated protein. (338 aa)
	GCA_001748305_00786	Unannotated protein. (362 aa)
	GCA_001748305_00617	Unannotated protein. (509 aa)

Your Current Organism:

Streptomyces luteocolor

NCBI taxonomy Id: 285500
Other names: S. luteocolor

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
GCA_001748305_00617	GCA_001748305_03860	Unannotated protein.	Unannotated protein.	0.905
GCA_001748305_00617	GCA_001748305_07696	Unannotated protein.	Unannotated protein.	0.407
GCA_001748305_01772	GCA_001748305_03860	Unannotated protein.	Unannotated protein.	0.833
GCA_001748305_01772	GCA_001748305_06680	Unannotated protein.	Unannotated protein.	0.829
GCA_001748305_01772	GCA_001748305_07696	Unannotated protein.	Unannotated protein.	0.407
GCA_001748305_01772	GCA_001748305_07754	Unannotated protein.	Unannotated protein.	0.567
GCA_001748305_01885	GCA_001748305_02914	Unannotated protein.	Unannotated protein.	0.688
GCA_001748305_01885	GCA_001748305_03860	Unannotated protein.	Unannotated protein.	0.858
GCA_001748305_01885	GCA_001748305_05091	Unannotated protein.	Unannotated protein.	0.857
GCA_001748305_01885	GCA_001748305_05332	Unannotated protein.	Unannotated protein.	0.688
GCA_001748305_01885	GCA_001748305_06771	Unannotated protein.	Unannotated protein.	0.793
GCA_001748305_01885	GCA_001748305_07696	Unannotated protein.	Unannotated protein.	0.765
GCA_001748305_01885	GCA_001748305_08126	Unannotated protein.	Unannotated protein.	0.405
GCA_001748305_02118	GCA_001748305_02914	Unannotated protein.	Unannotated protein.	0.606
GCA_001748305_02118	GCA_001748305_03860	Unannotated protein.	Unannotated protein.	0.672
GCA_001748305_02118	GCA_001748305_06771	Unannotated protein.	Unannotated protein.	0.642
GCA_001748305_02118	GCA_001748305_07696	Unannotated protein.	Unannotated protein.	0.748
GCA_001748305_02118	GCA_001748305_08126	Unannotated protein.	Unannotated protein.	0.462
GCA_001748305_02914	GCA_001748305_01885	Unannotated protein.	Unannotated protein.	0.688
GCA_001748305_02914	GCA_001748305_02118	Unannotated protein.	Unannotated protein.	0.606