(18 nodes) Mixed, incl. Condensation domain, and SpoVT / AbrB like domain network (Azospirillum oryzae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	SMF88987.1	Protein of unknown function. (102 aa)
	SMF88989.1	Uncharacterized iron-regulated membrane protein. (524 aa)
	SMF88992.1	Hypothetical protein. (107 aa)
	SMF88994.1	Outer-membrane receptor for ferric coprogen and ferric-rhodotorulic acid. (740 aa)
	SMF88997.1	L-ornithine N5-oxygenase. (445 aa)
	SMF89000.1	Protein N-acetyltransferase, RimJ/RimL family. (363 aa)
	SMF89003.1	Putative ATP-binding cassette transporter. (549 aa)
	SMF89006.1	Amino acid adenylation domain-containing protein. (1066 aa)
	SMF89009.1	Diaminobutyrate aminotransferase apoenzyme; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (482 aa)
	SMF89012.1	MbtH protein. (69 aa)
	SMF89015.1	Taurine dioxygenase, alpha-ketoglutarate-dependent. (343 aa)
	SMF89018.1	Amino acid adenylation domain-containing protein. (2918 aa)
	SMF89021.1	Amino acid adenylation domain-containing protein. (983 aa)
	SMF89024.1	Non-ribosomal peptide synthase domain TIGR01720/amino acid adenylation domain-containing protein; Belongs to the ATP-dependent AMP-binding enzyme family. (1969 aa)
	SMF89026.1	Putative addiction module antidote. (74 aa)
	SMF89029.1	Death on curing protein. (142 aa)
	SMF89031.1	Transcriptional regulator, AbrB family. (78 aa)
	SMF89033.1	Hypothetical protein. (135 aa)

Your Current Organism:

Azospirillum oryzae

NCBI taxonomy Id: 286727
Other names: A. oryzae, Azospirillum oryzae Xie and Yokota 2005, CCTCC AB204051, IAM 15130, JCM 21588, NBRC 102291, strain COC8

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SMF88987.1	SMF88989.1	SAMN02982917_6572	SAMN02982917_6573	Protein of unknown function.	Uncharacterized iron-regulated membrane protein.	0.788
SMF88987.1	SMF88992.1	SAMN02982917_6572	SAMN02982917_6574	Protein of unknown function.	Hypothetical protein.	0.773
SMF88987.1	SMF88994.1	SAMN02982917_6572	SAMN02982917_6575	Protein of unknown function.	Outer-membrane receptor for ferric coprogen and ferric-rhodotorulic acid.	0.773
SMF88987.1	SMF88997.1	SAMN02982917_6572	SAMN02982917_6576	Protein of unknown function.	L-ornithine N5-oxygenase.	0.723
SMF88987.1	SMF89000.1	SAMN02982917_6572	SAMN02982917_6577	Protein of unknown function.	Protein N-acetyltransferase, RimJ/RimL family.	0.723
SMF88987.1	SMF89003.1	SAMN02982917_6572	SAMN02982917_6578	Protein of unknown function.	Putative ATP-binding cassette transporter.	0.510
SMF88987.1	SMF89006.1	SAMN02982917_6572	SAMN02982917_6579	Protein of unknown function.	Amino acid adenylation domain-containing protein.	0.510
SMF88987.1	SMF89009.1	SAMN02982917_6572	SAMN02982917_6580	Protein of unknown function.	Diaminobutyrate aminotransferase apoenzyme; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.	0.500
SMF88987.1	SMF89012.1	SAMN02982917_6572	SAMN02982917_6581	Protein of unknown function.	MbtH protein.	0.420
SMF88989.1	SMF88987.1	SAMN02982917_6573	SAMN02982917_6572	Uncharacterized iron-regulated membrane protein.	Protein of unknown function.	0.788
SMF88989.1	SMF88992.1	SAMN02982917_6573	SAMN02982917_6574	Uncharacterized iron-regulated membrane protein.	Hypothetical protein.	0.773
SMF88989.1	SMF88994.1	SAMN02982917_6573	SAMN02982917_6575	Uncharacterized iron-regulated membrane protein.	Outer-membrane receptor for ferric coprogen and ferric-rhodotorulic acid.	0.926
SMF88989.1	SMF88997.1	SAMN02982917_6573	SAMN02982917_6576	Uncharacterized iron-regulated membrane protein.	L-ornithine N5-oxygenase.	0.764
SMF88989.1	SMF89000.1	SAMN02982917_6573	SAMN02982917_6577	Uncharacterized iron-regulated membrane protein.	Protein N-acetyltransferase, RimJ/RimL family.	0.745
SMF88989.1	SMF89003.1	SAMN02982917_6573	SAMN02982917_6578	Uncharacterized iron-regulated membrane protein.	Putative ATP-binding cassette transporter.	0.547
SMF88989.1	SMF89006.1	SAMN02982917_6573	SAMN02982917_6579	Uncharacterized iron-regulated membrane protein.	Amino acid adenylation domain-containing protein.	0.510
SMF88989.1	SMF89009.1	SAMN02982917_6573	SAMN02982917_6580	Uncharacterized iron-regulated membrane protein.	Diaminobutyrate aminotransferase apoenzyme; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.	0.500
SMF88989.1	SMF89012.1	SAMN02982917_6573	SAMN02982917_6581	Uncharacterized iron-regulated membrane protein.	MbtH protein.	0.442
SMF88989.1	SMF89015.1	SAMN02982917_6573	SAMN02982917_6582	Uncharacterized iron-regulated membrane protein.	Taurine dioxygenase, alpha-ketoglutarate-dependent.	0.505
SMF88992.1	SMF88987.1	SAMN02982917_6574	SAMN02982917_6572	Hypothetical protein.	Protein of unknown function.	0.773