(27 nodes) Ribonuclease H-like superfamily network (Azospirillum oryzae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	SMF83367.1	Crossover junction endodeoxyribonuclease RuvC. (162 aa)
	dnaQ	DNA polymerase-3 subunit epsilon; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'- 5' exonuclease. (227 aa)
	polA	DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. (967 aa)
	SMF47677.1	Hypothetical protein. (174 aa)
	SMF47467.1	DNA polymerase-3 subunit epsilon. (214 aa)
	SMF41715.1	Integrase core domain-containing protein. (443 aa)
	SMF39533.1	Integrase core domain-containing protein. (443 aa)
	SMF39501.1	Transposase (or an inactivated derivative). (237 aa)
	SMF30544.1	Uncharacterized protein. (783 aa)
	SMF21868.1	Transposase. (506 aa)
	SMF20968.1	DNA polymerase-3 subunit epsilon. (210 aa)
	rnhB	RNase HII; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids. (221 aa)
	SMF91828.1	Integrase core domain-containing protein. (443 aa)
	SMF91393.1	DNA polymerase-3 subunit epsilon. (310 aa)
	SMF90843.1	Transposase. (506 aa)
	SMF89725.1	DNA polymerase-3 subunit epsilon. (216 aa)
	SMF89407.1	Transposase (or an inactivated derivative); Manually curated. (260 aa)
	SMF88393.1	Transposase (or an inactivated derivative). (272 aa)
	SMF84426.1	DNA polymerase-3 subunit epsilon. (159 aa)
	SMF82824.1	DNA polymerase-3 subunit epsilon. (209 aa)
	SMF81918.1	DNA polymerase-3 subunit epsilon. (741 aa)
	SMF81523.1	DNA polymerase-3 subunit epsilon. (458 aa)
	SMF79657.1	Putative holliday junction resolvase; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF HJR family. (181 aa)
	rnhA	Ribonuclease HI; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids. (158 aa)
	rnd	Ribonuclease D; Exonuclease involved in the 3' processing of various precursor tRNAs. Initiates hydrolysis at the 3'-terminus of an RNA molecule and releases 5'-mononucleotides; Belongs to the RNase D family. (396 aa)
	ruvC	Holliday junction endonuclease RuvC; Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group. (365 aa)
	SMF63643.1	Ribonuclease D. (208 aa)

Your Current Organism:

Azospirillum oryzae

NCBI taxonomy Id: 286727
Other names: A. oryzae, Azospirillum oryzae Xie and Yokota 2005, CCTCC AB204051, IAM 15130, JCM 21588, NBRC 102291, strain COC8

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SMF20968.1	SMF63643.1	SAMN02982917_0943	SAMN02982917_3231	DNA polymerase-3 subunit epsilon.	Ribonuclease D.	0.501
SMF20968.1	SMF81918.1	SAMN02982917_0943	SAMN02982917_5256	DNA polymerase-3 subunit epsilon.	DNA polymerase-3 subunit epsilon.	0.695
SMF20968.1	SMF91393.1	SAMN02982917_0943	SAMN02982917_0218	DNA polymerase-3 subunit epsilon.	DNA polymerase-3 subunit epsilon.	0.692
SMF20968.1	dnaQ	SAMN02982917_0943	SAMN02982917_3127	DNA polymerase-3 subunit epsilon.	DNA polymerase-3 subunit epsilon; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'- 5' exonuclease.	0.675
SMF20968.1	polA	SAMN02982917_0943	SAMN02982917_2504	DNA polymerase-3 subunit epsilon.	DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.	0.673
SMF20968.1	rnd	SAMN02982917_0943	SAMN02982917_4297	DNA polymerase-3 subunit epsilon.	Ribonuclease D; Exonuclease involved in the 3' processing of various precursor tRNAs. Initiates hydrolysis at the 3'-terminus of an RNA molecule and releases 5'-mononucleotides; Belongs to the RNase D family.	0.501
SMF20968.1	rnhA	SAMN02982917_0943	SAMN02982917_4579	DNA polymerase-3 subunit epsilon.	Ribonuclease HI; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids.	0.420
SMF47467.1	SMF63643.1	SAMN02982917_2321	SAMN02982917_3231	DNA polymerase-3 subunit epsilon.	Ribonuclease D.	0.501
SMF47467.1	SMF81918.1	SAMN02982917_2321	SAMN02982917_5256	DNA polymerase-3 subunit epsilon.	DNA polymerase-3 subunit epsilon.	0.695
SMF47467.1	polA	SAMN02982917_2321	SAMN02982917_2504	DNA polymerase-3 subunit epsilon.	DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.	0.673
SMF47467.1	rnd	SAMN02982917_2321	SAMN02982917_4297	DNA polymerase-3 subunit epsilon.	Ribonuclease D; Exonuclease involved in the 3' processing of various precursor tRNAs. Initiates hydrolysis at the 3'-terminus of an RNA molecule and releases 5'-mononucleotides; Belongs to the RNase D family.	0.501
SMF47467.1	rnhA	SAMN02982917_2321	SAMN02982917_4579	DNA polymerase-3 subunit epsilon.	Ribonuclease HI; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids.	0.420
SMF47677.1	polA	SAMN02982917_2338	SAMN02982917_2504	Hypothetical protein.	DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.	0.568
SMF63643.1	SMF20968.1	SAMN02982917_3231	SAMN02982917_0943	Ribonuclease D.	DNA polymerase-3 subunit epsilon.	0.501
SMF63643.1	SMF47467.1	SAMN02982917_3231	SAMN02982917_2321	Ribonuclease D.	DNA polymerase-3 subunit epsilon.	0.501
SMF63643.1	SMF81523.1	SAMN02982917_3231	SAMN02982917_5214	Ribonuclease D.	DNA polymerase-3 subunit epsilon.	0.501
SMF63643.1	SMF82824.1	SAMN02982917_3231	SAMN02982917_5425	Ribonuclease D.	DNA polymerase-3 subunit epsilon.	0.501
SMF63643.1	SMF84426.1	SAMN02982917_3231	SAMN02982917_5766	Ribonuclease D.	DNA polymerase-3 subunit epsilon.	0.501
SMF63643.1	SMF89725.1	SAMN02982917_3231	SAMN02982917_6838	Ribonuclease D.	DNA polymerase-3 subunit epsilon.	0.501
SMF63643.1	SMF91393.1	SAMN02982917_3231	SAMN02982917_0218	Ribonuclease D.	DNA polymerase-3 subunit epsilon.	0.501