(5 nodes) XPC-binding domain, and Ubiquilin network (Cyprinodon variegatus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ubqln4	Ubiquilin 4. (582 aa)
	xpc	Xeroderma pigmentosum, complementation group C. (903 aa)
	rad23a	RAD23 homolog A, nucleotide excision repair protein a. (351 aa)
	ENSCVAP00000021667	Ubiquitin-like domain-containing protein. (83 aa)
	rad23b	RAD23 homolog B, nucleotide excision repair protein. (383 aa)

Your Current Organism:

Cyprinodon variegatus

NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCVAP00000021667	rad23a	ENSCVAP00000021667	ENSCVAP00000016224	Ubiquitin-like domain-containing protein.	RAD23 homolog A, nucleotide excision repair protein a.	0.955
ENSCVAP00000021667	rad23b	ENSCVAP00000021667	ENSCVAP00000030779	Ubiquitin-like domain-containing protein.	RAD23 homolog B, nucleotide excision repair protein.	0.955
ENSCVAP00000021667	ubqln4	ENSCVAP00000021667	ENSCVAP00000006515	Ubiquitin-like domain-containing protein.	Ubiquilin 4.	0.972
ENSCVAP00000021667	xpc	ENSCVAP00000021667	ENSCVAP00000011449	Ubiquitin-like domain-containing protein.	Xeroderma pigmentosum, complementation group C.	0.844
rad23a	ENSCVAP00000021667	ENSCVAP00000016224	ENSCVAP00000021667	RAD23 homolog A, nucleotide excision repair protein a.	Ubiquitin-like domain-containing protein.	0.955
rad23a	rad23b	ENSCVAP00000016224	ENSCVAP00000030779	RAD23 homolog A, nucleotide excision repair protein a.	RAD23 homolog B, nucleotide excision repair protein.	0.913
rad23a	ubqln4	ENSCVAP00000016224	ENSCVAP00000006515	RAD23 homolog A, nucleotide excision repair protein a.	Ubiquilin 4.	0.855
rad23a	xpc	ENSCVAP00000016224	ENSCVAP00000011449	RAD23 homolog A, nucleotide excision repair protein a.	Xeroderma pigmentosum, complementation group C.	0.975
rad23b	ENSCVAP00000021667	ENSCVAP00000030779	ENSCVAP00000021667	RAD23 homolog B, nucleotide excision repair protein.	Ubiquitin-like domain-containing protein.	0.955
rad23b	rad23a	ENSCVAP00000030779	ENSCVAP00000016224	RAD23 homolog B, nucleotide excision repair protein.	RAD23 homolog A, nucleotide excision repair protein a.	0.913
rad23b	ubqln4	ENSCVAP00000030779	ENSCVAP00000006515	RAD23 homolog B, nucleotide excision repair protein.	Ubiquilin 4.	0.855
rad23b	xpc	ENSCVAP00000030779	ENSCVAP00000011449	RAD23 homolog B, nucleotide excision repair protein.	Xeroderma pigmentosum, complementation group C.	0.975
ubqln4	ENSCVAP00000021667	ENSCVAP00000006515	ENSCVAP00000021667	Ubiquilin 4.	Ubiquitin-like domain-containing protein.	0.972
ubqln4	rad23a	ENSCVAP00000006515	ENSCVAP00000016224	Ubiquilin 4.	RAD23 homolog A, nucleotide excision repair protein a.	0.855
ubqln4	rad23b	ENSCVAP00000006515	ENSCVAP00000030779	Ubiquilin 4.	RAD23 homolog B, nucleotide excision repair protein.	0.855
ubqln4	xpc	ENSCVAP00000006515	ENSCVAP00000011449	Ubiquilin 4.	Xeroderma pigmentosum, complementation group C.	0.792
xpc	ENSCVAP00000021667	ENSCVAP00000011449	ENSCVAP00000021667	Xeroderma pigmentosum, complementation group C.	Ubiquitin-like domain-containing protein.	0.844
xpc	rad23a	ENSCVAP00000011449	ENSCVAP00000016224	Xeroderma pigmentosum, complementation group C.	RAD23 homolog A, nucleotide excision repair protein a.	0.975
xpc	rad23b	ENSCVAP00000011449	ENSCVAP00000030779	Xeroderma pigmentosum, complementation group C.	RAD23 homolog B, nucleotide excision repair protein.	0.975
xpc	ubqln4	ENSCVAP00000011449	ENSCVAP00000006515	Xeroderma pigmentosum, complementation group C.	Ubiquilin 4.	0.792