(43 nodes) Mixed, incl. JmjC domain, and BRCA1-A complex network (Cyprinodon variegatus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC107093321	Lysine (K)-specific demethylase 4B. (1222 aa)
	babam2	BRISC and BRCA1 A complex member 2. (386 aa)
	neurl4	Neuralized E3 ubiquitin protein ligase 4. (1598 aa)
	rccd1	RCC1 domain containing 1. (374 aa)
	dock11	Dedicator of cytokinesis 11; Belongs to the DOCK family. (2047 aa)
	skida1	SKI/DACH domain containing 1. (759 aa)
	ENSCVAP00000008191	Reverse transcriptase domain-containing protein. (509 aa)
	LOC107087324	Dedicator of cytokinesis 9b; Belongs to the DOCK family. (1993 aa)
	mapk6	Mitogen-activated protein kinase 6. (745 aa)
	JMJD8	Jumonji domain containing 8. (244 aa)
	ankrd11	Ankyrin repeat domain 11. (2823 aa)
	ENSCVAP00000013768	Hect domain and RLD 7. (424 aa)
	ENSCVAP00000013786	HECT domain-containing protein. (233 aa)
	lonrf1	LON peptidase N-terminal domain and ring finger 1, like. (736 aa)
	LOC107086334	LON peptidase N-terminal domain and ring finger 1. (585 aa)
	kdm3b	Lysine (K)-specific demethylase 3B. (1788 aa)
	kdm4a	PHD-type domain-containing protein. (292 aa)
	abraxas2	Abraxas 2, BRISC complex subunit. (453 aa)
	kdm4c	Lysine (K)-specific demethylase 4C. (1534 aa)
	lonrf2	Si:ch1073-440b2.1. (723 aa)
	LONRF3	LON peptidase N-terminal domain and ring finger 3. (693 aa)
	babam1	BRISC and BRCA1 A complex member 1. (380 aa)
	ENSCVAP00000019336	Uncharacterized protein. (98 aa)
	ENSCVAP00000019362	SPRY domain-containing protein. (246 aa)
	ENSCVAP00000019395	Uncharacterized protein. (446 aa)
	ENSCVAP00000019411	HECT domain-containing protein. (243 aa)
	ENSCVAP00000019490	Lysine (K)-specific demethylase 4A, genome duplicate b. (357 aa)
	DOCK9	Dedicator of cytokinesis 9; Belongs to the DOCK family. (1936 aa)
	LOC107080779	Bifunctional lysine-specific demethylase and histidyl-hydroxylase; Oxygenase that can act as both a histone lysine demethylase and a ribosomal histidine hydroxylase. (573 aa)
	tyw5	tRNA-yW synthesizing protein 5. (317 aa)
	ENSCVAP00000024399	Uncharacterized protein. (271 aa)
	uimc1	Uncharacterized protein. (990 aa)
	kdm8	Lysine (K)-specific demethylase 8. (411 aa)
	ENSCVAP00000028934	Uncharacterized protein. (199 aa)
	dock10	Dedicator of cytokinesis 10; Belongs to the DOCK family. (2072 aa)
	jmjd4	Jumonji domain containing 4. (431 aa)
	LOC107102789	Uncharacterized protein. (595 aa)
	ENSCVAP00000030894	Reverse transcriptase domain-containing protein. (142 aa)
	abraxas1	Abraxas 1, BRCA1 A complex subunit. (317 aa)
	hspbap1	Hspb associated protein 1. (441 aa)
	ENSCVAP00000032569	Uncharacterized protein. (245 aa)
	Herc1	WD_REPEATS_REGION domain-containing protein. (235 aa)
	ENSCVAP00000032681	Uncharacterized protein. (201 aa)

Your Current Organism:

Cyprinodon variegatus

NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCVAP00000008191	abraxas1	ENSCVAP00000008191	ENSCVAP00000031199	Reverse transcriptase domain-containing protein.	Abraxas 1, BRCA1 A complex subunit.	0.430
ENSCVAP00000008191	abraxas2	ENSCVAP00000008191	ENSCVAP00000016538	Reverse transcriptase domain-containing protein.	Abraxas 2, BRISC complex subunit.	0.451
ENSCVAP00000008191	ankrd11	ENSCVAP00000008191	ENSCVAP00000013265	Reverse transcriptase domain-containing protein.	Ankyrin repeat domain 11.	0.561
ENSCVAP00000008191	babam1	ENSCVAP00000008191	ENSCVAP00000018674	Reverse transcriptase domain-containing protein.	BRISC and BRCA1 A complex member 1.	0.974
ENSCVAP00000008191	babam2	ENSCVAP00000008191	ENSCVAP00000002402	Reverse transcriptase domain-containing protein.	BRISC and BRCA1 A complex member 2.	0.974
ENSCVAP00000013768	ENSCVAP00000013786	ENSCVAP00000013768	ENSCVAP00000013786	Hect domain and RLD 7.	HECT domain-containing protein.	0.613
ENSCVAP00000013768	ENSCVAP00000019362	ENSCVAP00000013768	ENSCVAP00000019362	Hect domain and RLD 7.	SPRY domain-containing protein.	0.904
ENSCVAP00000013768	ENSCVAP00000019395	ENSCVAP00000013768	ENSCVAP00000019395	Hect domain and RLD 7.	Uncharacterized protein.	0.721
ENSCVAP00000013768	ENSCVAP00000019411	ENSCVAP00000013768	ENSCVAP00000019411	Hect domain and RLD 7.	HECT domain-containing protein.	0.540
ENSCVAP00000013768	ENSCVAP00000028934	ENSCVAP00000013768	ENSCVAP00000028934	Hect domain and RLD 7.	Uncharacterized protein.	0.772
ENSCVAP00000013768	ENSCVAP00000032569	ENSCVAP00000013768	ENSCVAP00000032569	Hect domain and RLD 7.	Uncharacterized protein.	0.481
ENSCVAP00000013768	Herc1	ENSCVAP00000013768	ENSCVAP00000032585	Hect domain and RLD 7.	WD_REPEATS_REGION domain-containing protein.	0.893
ENSCVAP00000013768	babam2	ENSCVAP00000013768	ENSCVAP00000002402	Hect domain and RLD 7.	BRISC and BRCA1 A complex member 2.	0.416
ENSCVAP00000013768	neurl4	ENSCVAP00000013768	ENSCVAP00000003974	Hect domain and RLD 7.	Neuralized E3 ubiquitin protein ligase 4.	0.450
ENSCVAP00000013786	ENSCVAP00000013768	ENSCVAP00000013786	ENSCVAP00000013768	HECT domain-containing protein.	Hect domain and RLD 7.	0.613
ENSCVAP00000013786	ENSCVAP00000019362	ENSCVAP00000013786	ENSCVAP00000019362	HECT domain-containing protein.	SPRY domain-containing protein.	0.735
ENSCVAP00000013786	ENSCVAP00000019395	ENSCVAP00000013786	ENSCVAP00000019395	HECT domain-containing protein.	Uncharacterized protein.	0.850
ENSCVAP00000013786	ENSCVAP00000028934	ENSCVAP00000013786	ENSCVAP00000028934	HECT domain-containing protein.	Uncharacterized protein.	0.537
ENSCVAP00000013786	Herc1	ENSCVAP00000013786	ENSCVAP00000032585	HECT domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.529
ENSCVAP00000013786	babam2	ENSCVAP00000013786	ENSCVAP00000002402	HECT domain-containing protein.	BRISC and BRCA1 A complex member 2.	0.416