(5 nodes) Positive regulation of fatty acid transport, and Response to magnesium ion network (Cyprinodon variegatus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	tnfrsf11a	Tumor necrosis factor receptor superfamily, member 11a, NFKB activator. (655 aa)
	TNFRSF11B	TNF receptor superfamily member 11b. (405 aa)
	LOC107101899	TNF superfamily member 11; Belongs to the tumor necrosis factor family. (267 aa)
	LOC107093456	TNF_2 domain-containing protein; Belongs to the tumor necrosis factor family. (254 aa)
	tnfsf12	TNF superfamily member 12; Belongs to the tumor necrosis factor family. (240 aa)

Your Current Organism:

Cyprinodon variegatus

NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC107093456	LOC107101899	ENSCVAP00000019931	ENSCVAP00000008225	TNF_2 domain-containing protein; Belongs to the tumor necrosis factor family.	TNF superfamily member 11; Belongs to the tumor necrosis factor family.	0.712
LOC107093456	tnfrsf11a	ENSCVAP00000019931	ENSCVAP00000002416	TNF_2 domain-containing protein; Belongs to the tumor necrosis factor family.	Tumor necrosis factor receptor superfamily, member 11a, NFKB activator.	0.580
LOC107093456	tnfsf12	ENSCVAP00000019931	ENSCVAP00000023578	TNF_2 domain-containing protein; Belongs to the tumor necrosis factor family.	TNF superfamily member 12; Belongs to the tumor necrosis factor family.	0.705
LOC107101899	LOC107093456	ENSCVAP00000008225	ENSCVAP00000019931	TNF superfamily member 11; Belongs to the tumor necrosis factor family.	TNF_2 domain-containing protein; Belongs to the tumor necrosis factor family.	0.712
LOC107101899	TNFRSF11B	ENSCVAP00000008225	ENSCVAP00000007239	TNF superfamily member 11; Belongs to the tumor necrosis factor family.	TNF receptor superfamily member 11b.	0.984
LOC107101899	tnfrsf11a	ENSCVAP00000008225	ENSCVAP00000002416	TNF superfamily member 11; Belongs to the tumor necrosis factor family.	Tumor necrosis factor receptor superfamily, member 11a, NFKB activator.	0.998
LOC107101899	tnfsf12	ENSCVAP00000008225	ENSCVAP00000023578	TNF superfamily member 11; Belongs to the tumor necrosis factor family.	TNF superfamily member 12; Belongs to the tumor necrosis factor family.	0.761
TNFRSF11B	LOC107101899	ENSCVAP00000007239	ENSCVAP00000008225	TNF receptor superfamily member 11b.	TNF superfamily member 11; Belongs to the tumor necrosis factor family.	0.984
TNFRSF11B	tnfrsf11a	ENSCVAP00000007239	ENSCVAP00000002416	TNF receptor superfamily member 11b.	Tumor necrosis factor receptor superfamily, member 11a, NFKB activator.	0.572
tnfrsf11a	LOC107093456	ENSCVAP00000002416	ENSCVAP00000019931	Tumor necrosis factor receptor superfamily, member 11a, NFKB activator.	TNF_2 domain-containing protein; Belongs to the tumor necrosis factor family.	0.580
tnfrsf11a	LOC107101899	ENSCVAP00000002416	ENSCVAP00000008225	Tumor necrosis factor receptor superfamily, member 11a, NFKB activator.	TNF superfamily member 11; Belongs to the tumor necrosis factor family.	0.998
tnfrsf11a	TNFRSF11B	ENSCVAP00000002416	ENSCVAP00000007239	Tumor necrosis factor receptor superfamily, member 11a, NFKB activator.	TNF receptor superfamily member 11b.	0.572
tnfrsf11a	tnfsf12	ENSCVAP00000002416	ENSCVAP00000023578	Tumor necrosis factor receptor superfamily, member 11a, NFKB activator.	TNF superfamily member 12; Belongs to the tumor necrosis factor family.	0.624
tnfsf12	LOC107093456	ENSCVAP00000023578	ENSCVAP00000019931	TNF superfamily member 12; Belongs to the tumor necrosis factor family.	TNF_2 domain-containing protein; Belongs to the tumor necrosis factor family.	0.705
tnfsf12	LOC107101899	ENSCVAP00000023578	ENSCVAP00000008225	TNF superfamily member 12; Belongs to the tumor necrosis factor family.	TNF superfamily member 11; Belongs to the tumor necrosis factor family.	0.761
tnfsf12	tnfrsf11a	ENSCVAP00000023578	ENSCVAP00000002416	TNF superfamily member 12; Belongs to the tumor necrosis factor family.	Tumor necrosis factor receptor superfamily, member 11a, NFKB activator.	0.624