29 items (Cyprinodon variegatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSCVAP00000005849	Si:zfos-1837d3.1. (196 aa)
	sptbn1	Spectrin beta, non-erythrocytic 1. (1991 aa)
	ENSCVAP00000006030	Uncharacterized protein. (403 aa)
	ENSCVAP00000006043	Uncharacterized protein. (86 aa)
	ENSCVAP00000006056	Uncharacterized protein. (453 aa)
	Sptan1	Uncharacterized protein. (178 aa)
	ENSCVAP00000010843	Uncharacterized protein. (67 aa)
	ENSCVAP00000010979	Uncharacterized protein. (533 aa)
	LOC107093747	Spectrin beta chain; Belongs to the spectrin family. (2149 aa)
	Ank3	Death domain-containing protein. (117 aa)
	SAT1	Spermidine/spermine N1-acetyltransferase 1b. (171 aa)
	LOC107084655	Poly [ADP-ribose] polymerase. (1261 aa)
	ENSCVAP00000016828	Uncharacterized protein. (914 aa)
	ENSCVAP00000016891	ANK_REP_REGION domain-containing protein. (480 aa)
	RNF146	Ring finger protein 146. (354 aa)
	LOC107087278	Ankyrin 1, erythrocytic a. (1224 aa)
	LOC107097984	Ring finger protein 146. (353 aa)
	ENSCVAP00000022207	Uncharacterized protein. (81 aa)
	ENSCVAP00000022212	Uncharacterized protein. (250 aa)
	LOC107089847	Spectrin beta chain; Belongs to the spectrin family. (2197 aa)
	ank1	Ankyrin 1, erythrocytic b. (1322 aa)
	ENSCVAP00000027104	PH domain-containing protein. (128 aa)
	ENSCVAP00000027121	Calponin-homology (CH) domain-containing protein. (230 aa)
	ENSCVAP00000027138	ANK_REP_REGION domain-containing protein. (385 aa)
	ENSCVAP00000027162	Death domain-containing protein. (160 aa)
	ENSCVAP00000027661	Uncharacterized protein. (542 aa)
	sptbn4	PH domain-containing protein. (1399 aa)
	ENSCVAP00000028480	ANK_REP_REGION domain-containing protein. (441 aa)
	LOC107104605	Spermidine/spermine N1-acetyltransferase 1. (169 aa)

Your Current Organism:

Cyprinodon variegatus

NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Ank3	ENSCVAP00000005849	ENSCVAP00000013193	ENSCVAP00000005849	Death domain-containing protein.	Si:zfos-1837d3.1.	0.449
Ank3	ENSCVAP00000006030	ENSCVAP00000013193	ENSCVAP00000006030	Death domain-containing protein.	Uncharacterized protein.	0.405
Ank3	ENSCVAP00000006056	ENSCVAP00000013193	ENSCVAP00000006056	Death domain-containing protein.	Uncharacterized protein.	0.405
Ank3	ENSCVAP00000010979	ENSCVAP00000013193	ENSCVAP00000010979	Death domain-containing protein.	Uncharacterized protein.	0.449
Ank3	ENSCVAP00000016891	ENSCVAP00000013193	ENSCVAP00000016891	Death domain-containing protein.	ANK_REP_REGION domain-containing protein.	0.866
Ank3	ENSCVAP00000022207	ENSCVAP00000013193	ENSCVAP00000022207	Death domain-containing protein.	Uncharacterized protein.	0.449
Ank3	ENSCVAP00000022212	ENSCVAP00000013193	ENSCVAP00000022212	Death domain-containing protein.	Uncharacterized protein.	0.449
Ank3	ENSCVAP00000027104	ENSCVAP00000013193	ENSCVAP00000027104	Death domain-containing protein.	PH domain-containing protein.	0.449
Ank3	ENSCVAP00000027121	ENSCVAP00000013193	ENSCVAP00000027121	Death domain-containing protein.	Calponin-homology (CH) domain-containing protein.	0.449
Ank3	ENSCVAP00000027138	ENSCVAP00000013193	ENSCVAP00000027138	Death domain-containing protein.	ANK_REP_REGION domain-containing protein.	0.865
Ank3	ENSCVAP00000027661	ENSCVAP00000013193	ENSCVAP00000027661	Death domain-containing protein.	Uncharacterized protein.	0.449
Ank3	ENSCVAP00000028480	ENSCVAP00000013193	ENSCVAP00000028480	Death domain-containing protein.	ANK_REP_REGION domain-containing protein.	0.880
Ank3	LOC107087278	ENSCVAP00000013193	ENSCVAP00000019155	Death domain-containing protein.	Ankyrin 1, erythrocytic a.	0.869
Ank3	LOC107089847	ENSCVAP00000013193	ENSCVAP00000026720	Death domain-containing protein.	Spectrin beta chain; Belongs to the spectrin family.	0.449
Ank3	LOC107093747	ENSCVAP00000013193	ENSCVAP00000012179	Death domain-containing protein.	Spectrin beta chain; Belongs to the spectrin family.	0.449
Ank3	LOC107097984	ENSCVAP00000013193	ENSCVAP00000021795	Death domain-containing protein.	Ring finger protein 146.	0.609
Ank3	RNF146	ENSCVAP00000013193	ENSCVAP00000017623	Death domain-containing protein.	Ring finger protein 146.	0.609
Ank3	Sptan1	ENSCVAP00000013193	ENSCVAP00000006080	Death domain-containing protein.	Uncharacterized protein.	0.405
Ank3	ank1	ENSCVAP00000013193	ENSCVAP00000026904	Death domain-containing protein.	Ankyrin 1, erythrocytic b.	0.856
Ank3	sptbn1	ENSCVAP00000013193	ENSCVAP00000005905	Death domain-containing protein.	Spectrin beta, non-erythrocytic 1.	0.449