16 items (Cyprinodon variegatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	gemin2	Gem-associated protein 2; The SMN complex plays a catalyst role in the assembly of small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Thereby, plays an important role in the splicing of cellular pre-mRNAs; Belongs to the gemin-2 family. (253 aa)
	gemin7	Gem (nuclear organelle) associated protein 7. (126 aa)
	gemin6	Gem (nuclear organelle) associated protein 6. (176 aa)
	LOC107083817	Survival of motor neuron 1, telomeric. (284 aa)
	LOC107101921	Uncharacterized protein. (3796 aa)
	LOC107103028	Uncharacterized protein. (491 aa)
	gemin4	Gem (nuclear organelle) associated protein 4. (1031 aa)
	LOC107085886	Uncharacterized protein. (732 aa)
	ddx20	DEAD (Asp-Glu-Ala-Asp) box polypeptide 20; Belongs to the DEAD box helicase family. (767 aa)
	strap	Serine/threonine kinase receptor associated protein. (277 aa)
	gemin8	Gem (nuclear organelle) associated protein 8. (203 aa)
	LOC107102562	Si:ch211-140b10.6. (150 aa)
	ENSCVAP00000026894	XPG_I_2 domain-containing protein. (525 aa)
	LOC107104291	XPG_I_2 domain-containing protein. (563 aa)
	gemin5	Gem (nuclear organelle) associated protein 5. (1463 aa)
	LOC107098047	XPG_I_2 domain-containing protein. (624 aa)

Your Current Organism:

Cyprinodon variegatus

NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCVAP00000026894	LOC107083817	ENSCVAP00000026894	ENSCVAP00000006014	XPG_I_2 domain-containing protein.	Survival of motor neuron 1, telomeric.	0.538
ENSCVAP00000026894	ddx20	ENSCVAP00000026894	ENSCVAP00000012414	XPG_I_2 domain-containing protein.	DEAD (Asp-Glu-Ala-Asp) box polypeptide 20; Belongs to the DEAD box helicase family.	0.480
LOC107083817	ENSCVAP00000026894	ENSCVAP00000006014	ENSCVAP00000026894	Survival of motor neuron 1, telomeric.	XPG_I_2 domain-containing protein.	0.538
LOC107083817	LOC107085886	ENSCVAP00000006014	ENSCVAP00000011440	Survival of motor neuron 1, telomeric.	Uncharacterized protein.	0.538
LOC107083817	LOC107098047	ENSCVAP00000006014	ENSCVAP00000032335	Survival of motor neuron 1, telomeric.	XPG_I_2 domain-containing protein.	0.538
LOC107083817	LOC107102562	ENSCVAP00000006014	ENSCVAP00000024049	Survival of motor neuron 1, telomeric.	Si:ch211-140b10.6.	0.551
LOC107083817	LOC107103028	ENSCVAP00000006014	ENSCVAP00000008746	Survival of motor neuron 1, telomeric.	Uncharacterized protein.	0.583
LOC107083817	LOC107104291	ENSCVAP00000006014	ENSCVAP00000027404	Survival of motor neuron 1, telomeric.	XPG_I_2 domain-containing protein.	0.538
LOC107083817	ddx20	ENSCVAP00000006014	ENSCVAP00000012414	Survival of motor neuron 1, telomeric.	DEAD (Asp-Glu-Ala-Asp) box polypeptide 20; Belongs to the DEAD box helicase family.	0.997
LOC107083817	gemin2	ENSCVAP00000006014	ENSCVAP00000002061	Survival of motor neuron 1, telomeric.	Gem-associated protein 2; The SMN complex plays a catalyst role in the assembly of small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Thereby, plays an important role in the splicing of cellular pre-mRNAs; Belongs to the gemin-2 family.	0.984
LOC107083817	gemin4	ENSCVAP00000006014	ENSCVAP00000011311	Survival of motor neuron 1, telomeric.	Gem (nuclear organelle) associated protein 4.	0.907
LOC107083817	gemin5	ENSCVAP00000006014	ENSCVAP00000031660	Survival of motor neuron 1, telomeric.	Gem (nuclear organelle) associated protein 5.	0.941
LOC107083817	gemin6	ENSCVAP00000006014	ENSCVAP00000005408	Survival of motor neuron 1, telomeric.	Gem (nuclear organelle) associated protein 6.	0.792
LOC107083817	gemin7	ENSCVAP00000006014	ENSCVAP00000003941	Survival of motor neuron 1, telomeric.	Gem (nuclear organelle) associated protein 7.	0.882
LOC107083817	gemin8	ENSCVAP00000006014	ENSCVAP00000021094	Survival of motor neuron 1, telomeric.	Gem (nuclear organelle) associated protein 8.	0.905
LOC107083817	strap	ENSCVAP00000006014	ENSCVAP00000018206	Survival of motor neuron 1, telomeric.	Serine/threonine kinase receptor associated protein.	0.804
LOC107085886	LOC107083817	ENSCVAP00000011440	ENSCVAP00000006014	Uncharacterized protein.	Survival of motor neuron 1, telomeric.	0.538
LOC107085886	ddx20	ENSCVAP00000011440	ENSCVAP00000012414	Uncharacterized protein.	DEAD (Asp-Glu-Ala-Asp) box polypeptide 20; Belongs to the DEAD box helicase family.	0.480
LOC107098047	LOC107083817	ENSCVAP00000032335	ENSCVAP00000006014	XPG_I_2 domain-containing protein.	Survival of motor neuron 1, telomeric.	0.538
LOC107098047	ddx20	ENSCVAP00000032335	ENSCVAP00000012414	XPG_I_2 domain-containing protein.	DEAD (Asp-Glu-Ala-Asp) box polypeptide 20; Belongs to the DEAD box helicase family.	0.480