12 items (Cyprinodon variegatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PTPRM	Protein tyrosine phosphatase receptor type M. (1450 aa)
	LOC107081856	5-hydroxytryptamine (serotonin) receptor 3A; Belongs to the ligand-gated ion channel (TC 1.A.9) family. (375 aa)
	ENSCVAP00000008439	Uncharacterized protein. (296 aa)
	LOC107101876	Uncharacterized protein. (220 aa)
	ENSCVAP00000009625	Ig-like domain-containing protein. (169 aa)
	mag	Myelin associated glycoprotein. (631 aa)
	LOC107083552	Uncharacterized protein. (396 aa)
	ENSCVAP00000019576	Uncharacterized protein. (358 aa)
	ENSCVAP00000025420	Si:ch73-380l3.2. (306 aa)
	LOC107096829	Vomeronasal 2, receptor 1. (812 aa)
	ENSCVAP00000028320	Ig-like domain-containing protein. (292 aa)
	LOC107083494	Galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase; Belongs to the glycosyltransferase 43 family. (357 aa)

Your Current Organism:

Cyprinodon variegatus

NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCVAP00000008439	mag	ENSCVAP00000008439	ENSCVAP00000012812	Uncharacterized protein.	Myelin associated glycoprotein.	0.905
ENSCVAP00000019576	LOC107101876	ENSCVAP00000019576	ENSCVAP00000008555	Uncharacterized protein.	Uncharacterized protein.	0.562
ENSCVAP00000025420	LOC107081856	ENSCVAP00000025420	ENSCVAP00000005668	Si:ch73-380l3.2.	5-hydroxytryptamine (serotonin) receptor 3A; Belongs to the ligand-gated ion channel (TC 1.A.9) family.	0.641
ENSCVAP00000025420	LOC107083494	ENSCVAP00000025420	ENSCVAP00000030841	Si:ch73-380l3.2.	Galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase; Belongs to the glycosyltransferase 43 family.	0.666
ENSCVAP00000025420	LOC107101876	ENSCVAP00000025420	ENSCVAP00000008555	Si:ch73-380l3.2.	Uncharacterized protein.	0.672
ENSCVAP00000025420	PTPRM	ENSCVAP00000025420	ENSCVAP00000002781	Si:ch73-380l3.2.	Protein tyrosine phosphatase receptor type M.	0.408
ENSCVAP00000028320	LOC107101876	ENSCVAP00000028320	ENSCVAP00000008555	Ig-like domain-containing protein.	Uncharacterized protein.	0.562
LOC107081856	ENSCVAP00000025420	ENSCVAP00000005668	ENSCVAP00000025420	5-hydroxytryptamine (serotonin) receptor 3A; Belongs to the ligand-gated ion channel (TC 1.A.9) family.	Si:ch73-380l3.2.	0.641
LOC107081856	LOC107096829	ENSCVAP00000005668	ENSCVAP00000027414	5-hydroxytryptamine (serotonin) receptor 3A; Belongs to the ligand-gated ion channel (TC 1.A.9) family.	Vomeronasal 2, receptor 1.	0.536
LOC107081856	PTPRM	ENSCVAP00000005668	ENSCVAP00000002781	5-hydroxytryptamine (serotonin) receptor 3A; Belongs to the ligand-gated ion channel (TC 1.A.9) family.	Protein tyrosine phosphatase receptor type M.	0.605
LOC107081856	mag	ENSCVAP00000005668	ENSCVAP00000012812	5-hydroxytryptamine (serotonin) receptor 3A; Belongs to the ligand-gated ion channel (TC 1.A.9) family.	Myelin associated glycoprotein.	0.542
LOC107083494	ENSCVAP00000025420	ENSCVAP00000030841	ENSCVAP00000025420	Galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase; Belongs to the glycosyltransferase 43 family.	Si:ch73-380l3.2.	0.666
LOC107083494	LOC107101876	ENSCVAP00000030841	ENSCVAP00000008555	Galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase; Belongs to the glycosyltransferase 43 family.	Uncharacterized protein.	0.671
LOC107083494	mag	ENSCVAP00000030841	ENSCVAP00000012812	Galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase; Belongs to the glycosyltransferase 43 family.	Myelin associated glycoprotein.	0.639
LOC107083552	LOC107101876	ENSCVAP00000012838	ENSCVAP00000008555	Uncharacterized protein.	Uncharacterized protein.	0.562
LOC107096829	LOC107081856	ENSCVAP00000027414	ENSCVAP00000005668	Vomeronasal 2, receptor 1.	5-hydroxytryptamine (serotonin) receptor 3A; Belongs to the ligand-gated ion channel (TC 1.A.9) family.	0.536
LOC107101876	ENSCVAP00000019576	ENSCVAP00000008555	ENSCVAP00000019576	Uncharacterized protein.	Uncharacterized protein.	0.562
LOC107101876	ENSCVAP00000025420	ENSCVAP00000008555	ENSCVAP00000025420	Uncharacterized protein.	Si:ch73-380l3.2.	0.672
LOC107101876	ENSCVAP00000028320	ENSCVAP00000008555	ENSCVAP00000028320	Uncharacterized protein.	Ig-like domain-containing protein.	0.562
LOC107101876	LOC107083494	ENSCVAP00000008555	ENSCVAP00000030841	Uncharacterized protein.	Galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase; Belongs to the glycosyltransferase 43 family.	0.671