18 items (Cyprinodon variegatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSCVAP00000001288	Uncharacterized protein. (333 aa)
	ENSCVAP00000001302	Uncharacterized protein. (398 aa)
	LOC107083890	Uncharacterized protein. (1179 aa)
	LOC107098421	Contactin 1b. (1040 aa)
	LOC107098426	Neuronal cell adhesion molecule a. (1133 aa)
	LOC107086899	Uncharacterized protein. (1184 aa)
	LOC107105219	Contactin 2. (640 aa)
	LOC107098116	Uncharacterized protein. (1020 aa)
	NRCAM	Neuronal cell adhesion molecule. (1282 aa)
	ptprg	Carbonic anhydrase XVI b. (1403 aa)
	l1cam	L1 cell adhesion molecule, paralog a. (1279 aa)
	cntnap1	Contactin associated protein 1. (1308 aa)
	LOC107093193	Contactin 4. (1029 aa)
	ENSCVAP00000024411	Uncharacterized protein. (94 aa)
	ENSCVAP00000027560	Uncharacterized protein. (266 aa)
	ncam1	Neural cell adhesion molecule 1b. (1203 aa)
	ENSCVAP00000031791	Uncharacterized protein. (225 aa)
	LOC107090732	Uncharacterized protein. (1208 aa)

Your Current Organism:

Cyprinodon variegatus

NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCVAP00000001288	ENSCVAP00000001302	ENSCVAP00000001288	ENSCVAP00000001302	Uncharacterized protein.	Uncharacterized protein.	0.595
ENSCVAP00000001288	ENSCVAP00000024411	ENSCVAP00000001288	ENSCVAP00000024411	Uncharacterized protein.	Uncharacterized protein.	0.589
ENSCVAP00000001288	LOC107083890	ENSCVAP00000001288	ENSCVAP00000002951	Uncharacterized protein.	Uncharacterized protein.	0.485
ENSCVAP00000001288	LOC107086899	ENSCVAP00000001288	ENSCVAP00000012244	Uncharacterized protein.	Uncharacterized protein.	0.485
ENSCVAP00000001288	LOC107090732	ENSCVAP00000001288	ENSCVAP00000032515	Uncharacterized protein.	Uncharacterized protein.	0.485
ENSCVAP00000001288	LOC107098426	ENSCVAP00000001288	ENSCVAP00000003329	Uncharacterized protein.	Neuronal cell adhesion molecule a.	0.485
ENSCVAP00000001288	NRCAM	ENSCVAP00000001288	ENSCVAP00000017489	Uncharacterized protein.	Neuronal cell adhesion molecule.	0.485
ENSCVAP00000001288	l1cam	ENSCVAP00000001288	ENSCVAP00000019118	Uncharacterized protein.	L1 cell adhesion molecule, paralog a.	0.485
ENSCVAP00000001288	ptprg	ENSCVAP00000001288	ENSCVAP00000018934	Uncharacterized protein.	Carbonic anhydrase XVI b.	0.589
ENSCVAP00000001302	ENSCVAP00000001288	ENSCVAP00000001302	ENSCVAP00000001288	Uncharacterized protein.	Uncharacterized protein.	0.595
ENSCVAP00000001302	ENSCVAP00000024411	ENSCVAP00000001302	ENSCVAP00000024411	Uncharacterized protein.	Uncharacterized protein.	0.589
ENSCVAP00000001302	ENSCVAP00000027560	ENSCVAP00000001302	ENSCVAP00000027560	Uncharacterized protein.	Uncharacterized protein.	0.743
ENSCVAP00000001302	LOC107083890	ENSCVAP00000001302	ENSCVAP00000002951	Uncharacterized protein.	Uncharacterized protein.	0.485
ENSCVAP00000001302	LOC107086899	ENSCVAP00000001302	ENSCVAP00000012244	Uncharacterized protein.	Uncharacterized protein.	0.485
ENSCVAP00000001302	LOC107090732	ENSCVAP00000001302	ENSCVAP00000032515	Uncharacterized protein.	Uncharacterized protein.	0.485
ENSCVAP00000001302	LOC107098426	ENSCVAP00000001302	ENSCVAP00000003329	Uncharacterized protein.	Neuronal cell adhesion molecule a.	0.485
ENSCVAP00000001302	NRCAM	ENSCVAP00000001302	ENSCVAP00000017489	Uncharacterized protein.	Neuronal cell adhesion molecule.	0.485
ENSCVAP00000001302	l1cam	ENSCVAP00000001302	ENSCVAP00000019118	Uncharacterized protein.	L1 cell adhesion molecule, paralog a.	0.485
ENSCVAP00000001302	ptprg	ENSCVAP00000001302	ENSCVAP00000018934	Uncharacterized protein.	Carbonic anhydrase XVI b.	0.589
ENSCVAP00000024411	ENSCVAP00000001288	ENSCVAP00000024411	ENSCVAP00000001288	Uncharacterized protein.	Uncharacterized protein.	0.589