19 items (Cyprinodon variegatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	aqr	Aquarius intron-binding spliceosomal factor. (1469 aa)
	cwc25	CWC25 spliceosome associated protein homolog. (398 aa)
	LOC107093095	BUD31 homolog. (144 aa)
	rbm22	RNA binding motif protein 22. (427 aa)
	prpf19	Pre-mRNA processing factor 19. (505 aa)
	snw1	SNW domain containing 1. (498 aa)
	xab2	XPA binding protein 2. (849 aa)
	yju2	YJU2 splicing factor homolog. (338 aa)
	LOC107103552	ISY1 splicing factor homolog. (280 aa)
	dhx38	DEAH (Asp-Glu-Ala-His) box polypeptide 38. (1254 aa)
	LOC107091769	Cwf21 domain-containing protein. (1349 aa)
	cdc40	Cell division cycle 40 homolog (S. cerevisiae). (581 aa)
	cwc22	CWC22 spliceosome associated protein homolog. (1010 aa)
	prpf18	PRP18 pre-mRNA processing factor 18 homolog (yeast). (350 aa)
	crnkl1	Crooked neck pre-mRNA splicing factor 1. (743 aa)
	bud31	BUD31 homolog. (151 aa)
	ppie	Peptidyl-prolyl cis-trans isomerase E; Catalyzes the cis-trans isomerization of proline imidic peptide bonds in proteins; Belongs to the cyclophilin-type PPIase family. PPIase E subfamily. (301 aa)
	slu7	SLU7 homolog, splicing factor. (565 aa)
	syf2	SYF2 pre-mRNA-splicing factor. (239 aa)

Your Current Organism:

Cyprinodon variegatus

NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC107091769	LOC107093095	ENSCVAP00000021451	ENSCVAP00000008130	Cwf21 domain-containing protein.	BUD31 homolog.	0.915
LOC107091769	LOC107103552	ENSCVAP00000021451	ENSCVAP00000011992	Cwf21 domain-containing protein.	ISY1 splicing factor homolog.	0.957
LOC107091769	aqr	ENSCVAP00000021451	ENSCVAP00000002296	Cwf21 domain-containing protein.	Aquarius intron-binding spliceosomal factor.	0.746
LOC107091769	bud31	ENSCVAP00000021451	ENSCVAP00000028968	Cwf21 domain-containing protein.	BUD31 homolog.	0.915
LOC107091769	cdc40	ENSCVAP00000021451	ENSCVAP00000023907	Cwf21 domain-containing protein.	Cell division cycle 40 homolog (S. cerevisiae).	0.998
LOC107091769	crnkl1	ENSCVAP00000021451	ENSCVAP00000028240	Cwf21 domain-containing protein.	Crooked neck pre-mRNA splicing factor 1.	0.932
LOC107091769	cwc22	ENSCVAP00000021451	ENSCVAP00000025219	Cwf21 domain-containing protein.	CWC22 spliceosome associated protein homolog.	0.986
LOC107091769	cwc25	ENSCVAP00000021451	ENSCVAP00000006306	Cwf21 domain-containing protein.	CWC25 spliceosome associated protein homolog.	0.982
LOC107091769	dhx38	ENSCVAP00000021451	ENSCVAP00000019699	Cwf21 domain-containing protein.	DEAH (Asp-Glu-Ala-His) box polypeptide 38.	0.984
LOC107091769	ppie	ENSCVAP00000021451	ENSCVAP00000030591	Cwf21 domain-containing protein.	Peptidyl-prolyl cis-trans isomerase E; Catalyzes the cis-trans isomerization of proline imidic peptide bonds in proteins; Belongs to the cyclophilin-type PPIase family. PPIase E subfamily.	0.644
LOC107091769	prpf18	ENSCVAP00000021451	ENSCVAP00000026645	Cwf21 domain-containing protein.	PRP18 pre-mRNA processing factor 18 homolog (yeast).	0.765
LOC107091769	prpf19	ENSCVAP00000021451	ENSCVAP00000009933	Cwf21 domain-containing protein.	Pre-mRNA processing factor 19.	0.991
LOC107091769	rbm22	ENSCVAP00000021451	ENSCVAP00000008787	Cwf21 domain-containing protein.	RNA binding motif protein 22.	0.911
LOC107091769	slu7	ENSCVAP00000021451	ENSCVAP00000030607	Cwf21 domain-containing protein.	SLU7 homolog, splicing factor.	0.969
LOC107091769	snw1	ENSCVAP00000021451	ENSCVAP00000010064	Cwf21 domain-containing protein.	SNW domain containing 1.	0.953
LOC107091769	syf2	ENSCVAP00000021451	ENSCVAP00000030757	Cwf21 domain-containing protein.	SYF2 pre-mRNA-splicing factor.	0.981
LOC107091769	xab2	ENSCVAP00000021451	ENSCVAP00000010458	Cwf21 domain-containing protein.	XPA binding protein 2.	0.940
LOC107091769	yju2	ENSCVAP00000021451	ENSCVAP00000011327	Cwf21 domain-containing protein.	YJU2 splicing factor homolog.	0.978
LOC107093095	LOC107091769	ENSCVAP00000008130	ENSCVAP00000021451	BUD31 homolog.	Cwf21 domain-containing protein.	0.915
LOC107093095	LOC107103552	ENSCVAP00000008130	ENSCVAP00000011992	BUD31 homolog.	ISY1 splicing factor homolog.	0.974