(11 nodes) Mixed, incl. Myocardin-like, and MADS SRF-like network (Cyprinodon variegatus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC107102063	ETS transcription factor ELK4. (472 aa)
	scai	Suppressor of cancer cell invasion. (565 aa)
	ELK3	ETS transcription factor ELK3. (396 aa)
	srf	MADS-box domain-containing protein. (596 aa)
	LOC107091907	Uncharacterized protein. (2702 aa)
	mrtfa	Myocardin related transcription factor Ab. (1222 aa)
	MYOCD	Myocardin. (930 aa)
	LOC107096242	ETS domain-containing protein. (375 aa)
	LOC107082632	MADS-box domain-containing protein. (489 aa)
	LOC107092009	Uncharacterized protein; Belongs to the cytochrome P450 family. (390 aa)
	LOC107083040	Myocardin related transcription factor Bb. (909 aa)

Your Current Organism:

Cyprinodon variegatus

NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ELK3	LOC107082632	ENSCVAP00000006744	ENSCVAP00000023494	ETS transcription factor ELK3.	MADS-box domain-containing protein.	0.595
ELK3	srf	ENSCVAP00000006744	ENSCVAP00000015112	ETS transcription factor ELK3.	MADS-box domain-containing protein.	0.595
LOC107082632	ELK3	ENSCVAP00000023494	ENSCVAP00000006744	MADS-box domain-containing protein.	ETS transcription factor ELK3.	0.595
LOC107082632	LOC107083040	ENSCVAP00000023494	ENSCVAP00000028621	MADS-box domain-containing protein.	Myocardin related transcription factor Bb.	0.733
LOC107082632	LOC107096242	ENSCVAP00000023494	ENSCVAP00000020929	MADS-box domain-containing protein.	ETS domain-containing protein.	0.595
LOC107082632	LOC107102063	ENSCVAP00000023494	ENSCVAP00000003132	MADS-box domain-containing protein.	ETS transcription factor ELK4.	0.985
LOC107082632	MYOCD	ENSCVAP00000023494	ENSCVAP00000020767	MADS-box domain-containing protein.	Myocardin.	0.857
LOC107082632	mrtfa	ENSCVAP00000023494	ENSCVAP00000020662	MADS-box domain-containing protein.	Myocardin related transcription factor Ab.	0.733
LOC107082632	srf	ENSCVAP00000023494	ENSCVAP00000015112	MADS-box domain-containing protein.	MADS-box domain-containing protein.	0.902
LOC107083040	LOC107082632	ENSCVAP00000028621	ENSCVAP00000023494	Myocardin related transcription factor Bb.	MADS-box domain-containing protein.	0.733
LOC107083040	scai	ENSCVAP00000028621	ENSCVAP00000006193	Myocardin related transcription factor Bb.	Suppressor of cancer cell invasion.	0.509
LOC107083040	srf	ENSCVAP00000028621	ENSCVAP00000015112	Myocardin related transcription factor Bb.	MADS-box domain-containing protein.	0.733
LOC107096242	LOC107082632	ENSCVAP00000020929	ENSCVAP00000023494	ETS domain-containing protein.	MADS-box domain-containing protein.	0.595
LOC107096242	srf	ENSCVAP00000020929	ENSCVAP00000015112	ETS domain-containing protein.	MADS-box domain-containing protein.	0.595
LOC107102063	LOC107082632	ENSCVAP00000003132	ENSCVAP00000023494	ETS transcription factor ELK4.	MADS-box domain-containing protein.	0.985
LOC107102063	srf	ENSCVAP00000003132	ENSCVAP00000015112	ETS transcription factor ELK4.	MADS-box domain-containing protein.	0.985
MYOCD	LOC107082632	ENSCVAP00000020767	ENSCVAP00000023494	Myocardin.	MADS-box domain-containing protein.	0.857
MYOCD	srf	ENSCVAP00000020767	ENSCVAP00000015112	Myocardin.	MADS-box domain-containing protein.	0.857
mrtfa	LOC107082632	ENSCVAP00000020662	ENSCVAP00000023494	Myocardin related transcription factor Ab.	MADS-box domain-containing protein.	0.733
mrtfa	scai	ENSCVAP00000020662	ENSCVAP00000006193	Myocardin related transcription factor Ab.	Suppressor of cancer cell invasion.	0.509