(5 nodes) MADS SRF-like, and Regulation of phenotypic switching network (Cyprinodon variegatus)

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC107102063	ETS transcription factor ELK4. (472 aa)
	ELK3	ETS transcription factor ELK3. (396 aa)
	srf	MADS-box domain-containing protein. (596 aa)
	MYOCD	Myocardin. (930 aa)
	LOC107082632	MADS-box domain-containing protein. (489 aa)

Your Current Organism:

Cyprinodon variegatus

NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ELK3	LOC107082632	ENSCVAP00000006744	ENSCVAP00000023494	ETS transcription factor ELK3.	MADS-box domain-containing protein.	0.595
ELK3	srf	ENSCVAP00000006744	ENSCVAP00000015112	ETS transcription factor ELK3.	MADS-box domain-containing protein.	0.595
LOC107082632	ELK3	ENSCVAP00000023494	ENSCVAP00000006744	MADS-box domain-containing protein.	ETS transcription factor ELK3.	0.595
LOC107082632	LOC107102063	ENSCVAP00000023494	ENSCVAP00000003132	MADS-box domain-containing protein.	ETS transcription factor ELK4.	0.985
LOC107082632	MYOCD	ENSCVAP00000023494	ENSCVAP00000020767	MADS-box domain-containing protein.	Myocardin.	0.857
LOC107082632	srf	ENSCVAP00000023494	ENSCVAP00000015112	MADS-box domain-containing protein.	MADS-box domain-containing protein.	0.902
LOC107102063	LOC107082632	ENSCVAP00000003132	ENSCVAP00000023494	ETS transcription factor ELK4.	MADS-box domain-containing protein.	0.985
LOC107102063	srf	ENSCVAP00000003132	ENSCVAP00000015112	ETS transcription factor ELK4.	MADS-box domain-containing protein.	0.985
MYOCD	LOC107082632	ENSCVAP00000020767	ENSCVAP00000023494	Myocardin.	MADS-box domain-containing protein.	0.857
MYOCD	srf	ENSCVAP00000020767	ENSCVAP00000015112	Myocardin.	MADS-box domain-containing protein.	0.857
srf	ELK3	ENSCVAP00000015112	ENSCVAP00000006744	MADS-box domain-containing protein.	ETS transcription factor ELK3.	0.595
srf	LOC107082632	ENSCVAP00000015112	ENSCVAP00000023494	MADS-box domain-containing protein.	MADS-box domain-containing protein.	0.902
srf	LOC107102063	ENSCVAP00000015112	ENSCVAP00000003132	MADS-box domain-containing protein.	ETS transcription factor ELK4.	0.985
srf	MYOCD	ENSCVAP00000015112	ENSCVAP00000020767	MADS-box domain-containing protein.	Myocardin.	0.857