STRINGSTRING
LOC107095806 LOC107095806 LOC107103884 LOC107103884 LOC107088373 LOC107088373 LOC107083211 LOC107083211 pan2 pan2 LOC107096319 LOC107096319 LOC107087452 LOC107087452 eif4g2 eif4g2 pan3 pan3 LOC107096430 LOC107096430 paip1 paip1 eif4b eif4b LOC107088958 LOC107088958 EIF4G1 EIF4G1 LOC107083370 LOC107083370 LOC107103682 LOC107103682 LOC107090959 LOC107090959 LOC107097556 LOC107097556 eif4g3 eif4g3 LOC107085786 LOC107085786 LOC107098142 LOC107098142 EIF4E3 EIF4E3 eif4h eif4h LOC107103981 LOC107103981
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
LOC107095806Eukaryotic translation initiation factor 4ea; Belongs to the eukaryotic initiation factor 4E family. (217 aa)
LOC107103884Eukaryotic translation initiation factor 4A, isoform 2; Belongs to the DEAD box helicase family. (411 aa)
LOC107088373Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family. (635 aa)
LOC107083211Eukaryotic translation initiation factor 4, gamma 2b. (865 aa)
pan2PAN2-PAN3 deadenylation complex catalytic subunit PAN2; Catalytic subunit of the poly(A)-nuclease (PAN) deadenylation complex, one of two cytoplasmic mRNA deadenylases involved in general and miRNA-mediated mRNA turnover. PAN specifically shortens poly(A) tails of RNA and the activity is stimulated by poly(A)-binding protein (PABP). PAN deadenylation is followed by rapid degradation of the shortened mRNA tails by the CCR4-NOT complex. Deadenylated mRNAs are then degraded by two alternative mechanisms, namely exosome-mediated 3'-5' exonucleolytic degradation, or deadenlyation-dependent [...] (1210 aa)
LOC107096319Ribosomal protein S6 kinase; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. S6 kinase subfamily. (498 aa)
LOC107087452Ribosomal protein S6 kinase; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. S6 kinase subfamily. (509 aa)
eif4g2Eukaryotic translation initiation factor 4, gamma 2a. (889 aa)
pan3PAN2-PAN3 deadenylation complex subunit PAN3; Regulatory subunit of the poly(A)-nuclease (PAN) deadenylation complex, one of two cytoplasmic mRNA deadenylases involved in general and miRNA-mediated mRNA turnover. PAN specifically shortens poly(A) tails of RNA and the activity is stimulated by poly(A)-binding protein (PABP). PAN deadenylation is followed by rapid degradation of the shortened mRNA tails by the CCR4-NOT complex. Deadenylated mRNAs are then degraded by two alternative mechanisms, namely exosome-mediated 3'-5' exonucleolytic degradation, or deadenlyation-dependent mRNA deca [...] (793 aa)
LOC107096430Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family. (616 aa)
paip1Poly(A) binding protein interacting protein 1. (441 aa)
eif4bEukaryotic translation initiation factor 4Bb. (644 aa)
LOC107088958Uncharacterized protein. (216 aa)
EIF4G1Eukaryotic translation initiation factor 4 gamma 1. (1488 aa)
LOC107083370Uncharacterized protein. (1694 aa)
LOC107103682Uncharacterized protein. (119 aa)
LOC107090959Eukaryotic translation initiation factor 4E binding protein 1. (121 aa)
LOC107097556Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family. (639 aa)
eif4g3Eukaryotic translation initiation factor 4 gamma, 3a. (1758 aa)
LOC107085786Eukaryotic translation initiation factor 4eb; Belongs to the eukaryotic initiation factor 4E family. (224 aa)
LOC107098142Eukaryotic translation initiation factor 4A1B; Belongs to the DEAD box helicase family. (404 aa)
EIF4E3Eukaryotic translation initiation factor 4E family member 3; Belongs to the eukaryotic initiation factor 4E family. (225 aa)
eif4hEukaryotic translation initiation factor 4h. (251 aa)
LOC107103981Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family. (635 aa)
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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