(16 nodes) CCR4-NOT complex network (Cyprinodon variegatus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC107089476	CCR4-NOT transcription complex, subunit 2. (385 aa)
	cnot3	CCR4-NOT transcription complex, subunit 3a. (901 aa)
	cnot4	CCR4-NOT transcription complex, subunit 4a. (799 aa)
	LOC107094995	CCR4-NOT transcription complex, subunit 6a. (558 aa)
	cnot10	CCR4-NOT transcription complex, subunit 10. (759 aa)
	CNOT2	CCR4-NOT transcription complex subunit 2. (528 aa)
	cnot8	CCR4-NOT transcription complex, subunit 8. (285 aa)
	cnot6l	CCR4-NOT transcription complex, subunit 6-like. (559 aa)
	cnot9	CCR4-NOT transcription complex subunit 9. (299 aa)
	cnot11	CCR4-NOT transcription complex, subunit 11. (444 aa)
	LOC107093243	Nocturnin. (384 aa)
	LOC107091194	B-cell translocation gene 4. (256 aa)
	LOC107097999	Phosphodiesterase 12. (517 aa)
	LOC107082365	CCR4-NOT transcription complex, subunit 7. (286 aa)
	cnot1	CCR4-NOT transcription complex, subunit 1. (2293 aa)
	LOC107089013	CCR4-NOT transcription complex, subunit 3b. (905 aa)

Your Current Organism:

Cyprinodon variegatus

NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CNOT2	LOC107082365	ENSCVAP00000016829	ENSCVAP00000030296	CCR4-NOT transcription complex subunit 2.	CCR4-NOT transcription complex, subunit 7.	0.937
CNOT2	LOC107089013	ENSCVAP00000016829	ENSCVAP00000032246	CCR4-NOT transcription complex subunit 2.	CCR4-NOT transcription complex, subunit 3b.	0.951
CNOT2	LOC107091194	ENSCVAP00000016829	ENSCVAP00000020837	CCR4-NOT transcription complex subunit 2.	B-cell translocation gene 4.	0.502
CNOT2	LOC107093243	ENSCVAP00000016829	ENSCVAP00000020000	CCR4-NOT transcription complex subunit 2.	Nocturnin.	0.786
CNOT2	LOC107094995	ENSCVAP00000016829	ENSCVAP00000008664	CCR4-NOT transcription complex subunit 2.	CCR4-NOT transcription complex, subunit 6a.	0.810
CNOT2	LOC107097999	ENSCVAP00000016829	ENSCVAP00000021520	CCR4-NOT transcription complex subunit 2.	Phosphodiesterase 12.	0.786
CNOT2	cnot1	ENSCVAP00000016829	ENSCVAP00000030371	CCR4-NOT transcription complex subunit 2.	CCR4-NOT transcription complex, subunit 1.	0.983
CNOT2	cnot10	ENSCVAP00000016829	ENSCVAP00000014176	CCR4-NOT transcription complex subunit 2.	CCR4-NOT transcription complex, subunit 10.	0.944
CNOT2	cnot11	ENSCVAP00000016829	ENSCVAP00000019582	CCR4-NOT transcription complex subunit 2.	CCR4-NOT transcription complex, subunit 11.	0.942
CNOT2	cnot3	ENSCVAP00000016829	ENSCVAP00000006599	CCR4-NOT transcription complex subunit 2.	CCR4-NOT transcription complex, subunit 3a.	0.951
CNOT2	cnot4	ENSCVAP00000016829	ENSCVAP00000007692	CCR4-NOT transcription complex subunit 2.	CCR4-NOT transcription complex, subunit 4a.	0.973
CNOT2	cnot6l	ENSCVAP00000016829	ENSCVAP00000018417	CCR4-NOT transcription complex subunit 2.	CCR4-NOT transcription complex, subunit 6-like.	0.817
CNOT2	cnot8	ENSCVAP00000016829	ENSCVAP00000017925	CCR4-NOT transcription complex subunit 2.	CCR4-NOT transcription complex, subunit 8.	0.937
CNOT2	cnot9	ENSCVAP00000016829	ENSCVAP00000019282	CCR4-NOT transcription complex subunit 2.	CCR4-NOT transcription complex subunit 9.	0.983
LOC107082365	CNOT2	ENSCVAP00000030296	ENSCVAP00000016829	CCR4-NOT transcription complex, subunit 7.	CCR4-NOT transcription complex subunit 2.	0.937
LOC107082365	LOC107089013	ENSCVAP00000030296	ENSCVAP00000032246	CCR4-NOT transcription complex, subunit 7.	CCR4-NOT transcription complex, subunit 3b.	0.934
LOC107082365	LOC107089476	ENSCVAP00000030296	ENSCVAP00000002140	CCR4-NOT transcription complex, subunit 7.	CCR4-NOT transcription complex, subunit 2.	0.937
LOC107082365	LOC107091194	ENSCVAP00000030296	ENSCVAP00000020837	CCR4-NOT transcription complex, subunit 7.	B-cell translocation gene 4.	0.806
LOC107082365	LOC107093243	ENSCVAP00000030296	ENSCVAP00000020000	CCR4-NOT transcription complex, subunit 7.	Nocturnin.	0.795
LOC107082365	LOC107094995	ENSCVAP00000030296	ENSCVAP00000008664	CCR4-NOT transcription complex, subunit 7.	CCR4-NOT transcription complex, subunit 6a.	0.929