(13 nodes) Mixed, incl. Cholecystokinin-like, and Neuromedin U receptor network (Cyprinodon variegatus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC107086598	G_PROTEIN_RECEP_F1_2 domain-containing protein; Belongs to the G-protein coupled receptor 1 family. (395 aa)
	CCKAR	Cholecystokinin A receptor; Belongs to the G-protein coupled receptor 1 family. (456 aa)
	LOC107082601	G_PROTEIN_RECEP_F1_2 domain-containing protein; Belongs to the G-protein coupled receptor 1 family. (414 aa)
	ENSCVAP00000008197	Uncharacterized protein. (103 aa)
	Nmu	Uncharacterized protein. (102 aa)
	NMUR1	Neuromedin U receptor 1; Belongs to the G-protein coupled receptor 1 family. (339 aa)
	Ntsr1	Neurotensin receptor 1 (high affinity); Belongs to the G-protein coupled receptor 1 family. (288 aa)
	LOC107085147	Neuromedin U receptor 3; Belongs to the G-protein coupled receptor 1 family. (431 aa)
	LOC107099853	G_PROTEIN_RECEP_F1_2 domain-containing protein; Belongs to the G-protein coupled receptor 1 family. (448 aa)
	LOC107090766	Gastrin domain-containing protein. (103 aa)
	cck	Gastrin domain-containing protein. (137 aa)
	nts	Neurotensin. (149 aa)
	LOC107086764	Gastrin domain-containing protein. (131 aa)

Your Current Organism:

Cyprinodon variegatus

NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CCKAR	LOC107086764	ENSCVAP00000005517	ENSCVAP00000031883	Cholecystokinin A receptor; Belongs to the G-protein coupled receptor 1 family.	Gastrin domain-containing protein.	0.980
CCKAR	LOC107090766	ENSCVAP00000005517	ENSCVAP00000016235	Cholecystokinin A receptor; Belongs to the G-protein coupled receptor 1 family.	Gastrin domain-containing protein.	0.900
CCKAR	LOC107099853	ENSCVAP00000005517	ENSCVAP00000015960	Cholecystokinin A receptor; Belongs to the G-protein coupled receptor 1 family.	G_PROTEIN_RECEP_F1_2 domain-containing protein; Belongs to the G-protein coupled receptor 1 family.	0.908
CCKAR	Nmu	ENSCVAP00000005517	ENSCVAP00000009130	Cholecystokinin A receptor; Belongs to the G-protein coupled receptor 1 family.	Uncharacterized protein.	0.493
CCKAR	cck	ENSCVAP00000005517	ENSCVAP00000020289	Cholecystokinin A receptor; Belongs to the G-protein coupled receptor 1 family.	Gastrin domain-containing protein.	0.980
CCKAR	nts	ENSCVAP00000005517	ENSCVAP00000021788	Cholecystokinin A receptor; Belongs to the G-protein coupled receptor 1 family.	Neurotensin.	0.594
ENSCVAP00000008197	LOC107086764	ENSCVAP00000008197	ENSCVAP00000031883	Uncharacterized protein.	Gastrin domain-containing protein.	0.507
ENSCVAP00000008197	Nmu	ENSCVAP00000008197	ENSCVAP00000009130	Uncharacterized protein.	Uncharacterized protein.	0.648
ENSCVAP00000008197	cck	ENSCVAP00000008197	ENSCVAP00000020289	Uncharacterized protein.	Gastrin domain-containing protein.	0.507
ENSCVAP00000008197	nts	ENSCVAP00000008197	ENSCVAP00000021788	Uncharacterized protein.	Neurotensin.	0.937
LOC107082601	LOC107085147	ENSCVAP00000006858	ENSCVAP00000014150	G_PROTEIN_RECEP_F1_2 domain-containing protein; Belongs to the G-protein coupled receptor 1 family.	Neuromedin U receptor 3; Belongs to the G-protein coupled receptor 1 family.	0.908
LOC107082601	LOC107086764	ENSCVAP00000006858	ENSCVAP00000031883	G_PROTEIN_RECEP_F1_2 domain-containing protein; Belongs to the G-protein coupled receptor 1 family.	Gastrin domain-containing protein.	0.430
LOC107082601	Nmu	ENSCVAP00000006858	ENSCVAP00000009130	G_PROTEIN_RECEP_F1_2 domain-containing protein; Belongs to the G-protein coupled receptor 1 family.	Uncharacterized protein.	0.986
LOC107082601	cck	ENSCVAP00000006858	ENSCVAP00000020289	G_PROTEIN_RECEP_F1_2 domain-containing protein; Belongs to the G-protein coupled receptor 1 family.	Gastrin domain-containing protein.	0.430
LOC107082601	nts	ENSCVAP00000006858	ENSCVAP00000021788	G_PROTEIN_RECEP_F1_2 domain-containing protein; Belongs to the G-protein coupled receptor 1 family.	Neurotensin.	0.638
LOC107085147	LOC107082601	ENSCVAP00000014150	ENSCVAP00000006858	Neuromedin U receptor 3; Belongs to the G-protein coupled receptor 1 family.	G_PROTEIN_RECEP_F1_2 domain-containing protein; Belongs to the G-protein coupled receptor 1 family.	0.908
LOC107085147	LOC107086764	ENSCVAP00000014150	ENSCVAP00000031883	Neuromedin U receptor 3; Belongs to the G-protein coupled receptor 1 family.	Gastrin domain-containing protein.	0.430
LOC107085147	Nmu	ENSCVAP00000014150	ENSCVAP00000009130	Neuromedin U receptor 3; Belongs to the G-protein coupled receptor 1 family.	Uncharacterized protein.	0.986
LOC107085147	cck	ENSCVAP00000014150	ENSCVAP00000020289	Neuromedin U receptor 3; Belongs to the G-protein coupled receptor 1 family.	Gastrin domain-containing protein.	0.430
LOC107085147	nts	ENSCVAP00000014150	ENSCVAP00000021788	Neuromedin U receptor 3; Belongs to the G-protein coupled receptor 1 family.	Neurotensin.	0.638