(6 nodes) Mixed, incl. DDE transposase sub-family, and HIV integrase-binding domain superfamily network (Cyprinodon variegatus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSCVAP00000001305	Pogo transposable element derived with ZNF domain a. (1226 aa)
	LOC107088944	PWWP domain-containing protein. (496 aa)
	ENSCVAP00000026869	Pogo transposable element derived with ZNF domain b. (1875 aa)
	ENSCVAP00000027729	Multiple endocrine neoplasia I. (444 aa)
	LOC107101115	Lysine (K)-specific methyltransferase 2Ba. (2574 aa)
	ENSCVAP00000031499	BRK domain-containing protein. (647 aa)

Your Current Organism:

Cyprinodon variegatus

NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCVAP00000001305	ENSCVAP00000027729	ENSCVAP00000001305	ENSCVAP00000027729	Pogo transposable element derived with ZNF domain a.	Multiple endocrine neoplasia I.	0.415
ENSCVAP00000001305	ENSCVAP00000031499	ENSCVAP00000001305	ENSCVAP00000031499	Pogo transposable element derived with ZNF domain a.	BRK domain-containing protein.	0.417
ENSCVAP00000001305	LOC107088944	ENSCVAP00000001305	ENSCVAP00000003992	Pogo transposable element derived with ZNF domain a.	PWWP domain-containing protein.	0.772
ENSCVAP00000026869	ENSCVAP00000027729	ENSCVAP00000026869	ENSCVAP00000027729	Pogo transposable element derived with ZNF domain b.	Multiple endocrine neoplasia I.	0.415
ENSCVAP00000026869	ENSCVAP00000031499	ENSCVAP00000026869	ENSCVAP00000031499	Pogo transposable element derived with ZNF domain b.	BRK domain-containing protein.	0.417
ENSCVAP00000026869	LOC107088944	ENSCVAP00000026869	ENSCVAP00000003992	Pogo transposable element derived with ZNF domain b.	PWWP domain-containing protein.	0.772
ENSCVAP00000027729	ENSCVAP00000001305	ENSCVAP00000027729	ENSCVAP00000001305	Multiple endocrine neoplasia I.	Pogo transposable element derived with ZNF domain a.	0.415
ENSCVAP00000027729	ENSCVAP00000026869	ENSCVAP00000027729	ENSCVAP00000026869	Multiple endocrine neoplasia I.	Pogo transposable element derived with ZNF domain b.	0.415
ENSCVAP00000027729	LOC107088944	ENSCVAP00000027729	ENSCVAP00000003992	Multiple endocrine neoplasia I.	PWWP domain-containing protein.	0.944
ENSCVAP00000027729	LOC107101115	ENSCVAP00000027729	ENSCVAP00000030257	Multiple endocrine neoplasia I.	Lysine (K)-specific methyltransferase 2Ba.	0.759
ENSCVAP00000031499	ENSCVAP00000001305	ENSCVAP00000031499	ENSCVAP00000001305	BRK domain-containing protein.	Pogo transposable element derived with ZNF domain a.	0.417
ENSCVAP00000031499	ENSCVAP00000026869	ENSCVAP00000031499	ENSCVAP00000026869	BRK domain-containing protein.	Pogo transposable element derived with ZNF domain b.	0.417
LOC107088944	ENSCVAP00000001305	ENSCVAP00000003992	ENSCVAP00000001305	PWWP domain-containing protein.	Pogo transposable element derived with ZNF domain a.	0.772
LOC107088944	ENSCVAP00000026869	ENSCVAP00000003992	ENSCVAP00000026869	PWWP domain-containing protein.	Pogo transposable element derived with ZNF domain b.	0.772
LOC107088944	ENSCVAP00000027729	ENSCVAP00000003992	ENSCVAP00000027729	PWWP domain-containing protein.	Multiple endocrine neoplasia I.	0.944
LOC107088944	LOC107101115	ENSCVAP00000003992	ENSCVAP00000030257	PWWP domain-containing protein.	Lysine (K)-specific methyltransferase 2Ba.	0.710
LOC107101115	ENSCVAP00000027729	ENSCVAP00000030257	ENSCVAP00000027729	Lysine (K)-specific methyltransferase 2Ba.	Multiple endocrine neoplasia I.	0.759
LOC107101115	LOC107088944	ENSCVAP00000030257	ENSCVAP00000003992	Lysine (K)-specific methyltransferase 2Ba.	PWWP domain-containing protein.	0.710