46 items (Cyprinodon variegatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	phc1	Polyhomeotic homolog 1. (783 aa)
	ENSCVAP00000001235	Chromobox homolog 7b. (162 aa)
	LOC107092814	Chromobox homolog 8a (Pc class homolog, Drosophila). (340 aa)
	ENSCVAP00000002072	Uncharacterized protein. (262 aa)
	ENSCVAP00000002091	Uncharacterized protein. (123 aa)
	LOC107082777	Casein kinase 2, alpha prime polypeptide a; Belongs to the protein kinase superfamily. (356 aa)
	cbx6	Chromobox homolog 6a. (488 aa)
	auts2	Activator of transcription and developmental regulator AUTS2 a. (802 aa)
	LOC107085518	Chromobox homolog 8b. (387 aa)
	ENSCVAP00000006153	COMM domain containing 3. (193 aa)
	ENSCVAP00000006163	Bmi1 polycomb ring finger oncogene 1a. (332 aa)
	pcgf2	Polycomb group ring finger 2. (331 aa)
	LOC107102531	Casein kinase II subunit beta; Plays a complex role in regulating the basal catalytic activity of the alpha subunit; Belongs to the casein kinase 2 subunit beta family. (255 aa)
	CSNK2A2	Casein kinase 2 alpha 2; Belongs to the protein kinase superfamily. (350 aa)
	LOC107098672	Uncharacterized protein. (858 aa)
	RING1	Ring finger protein 1. (389 aa)
	LOC107089155	Polyhomeotic homolog 2b (Drosophila). (915 aa)
	ENSCVAP00000013511	Si:dkey-33o22.1. (93 aa)
	SCMH1	Scm polycomb group protein homolog 1. (724 aa)
	ENSCVAP00000015182	Uncharacterized protein. (106 aa)
	PCGF3	Polycomb group ring finger 3. (249 aa)
	pcgf5	Polycomb group ring finger 5a. (245 aa)
	rybp	RING1 and YY1 binding protein b. (268 aa)
	LOC107082907	Uncharacterized protein. (467 aa)
	LOC107102158	Scm polycomb group protein like 2. (614 aa)
	rnf2	Ring finger protein 2. (342 aa)
	LOC107089015	Uncharacterized protein. (901 aa)
	ENSCVAP00000020457	L3MBTL histone methyl-lysine binding protein 1a. (496 aa)
	LOC107092841	Chromobox homolog 4 (Pc class homolog, Drosophila). (549 aa)
	LOC107086178	Casein kinase II subunit beta; Plays a complex role in regulating the basal catalytic activity of the alpha subunit; Belongs to the casein kinase 2 subunit beta family. (215 aa)
	ENSCVAP00000021230	Uncharacterized protein. (160 aa)
	nptxr	Neuronal pentraxin receptor b. (594 aa)
	cbx4	Chromobox 4. (565 aa)
	LOC107089316	Chromobox homolog 2 (Drosophila Pc class). (530 aa)
	LOC107088796	Si:dkey-283b15.2. (578 aa)
	LOC107102542	Zgc:86598; Belongs to the protein kinase superfamily. (412 aa)
	LOC107101492	L3MBTL histone methyl-lysine binding protein 1b. (831 aa)
	ENSCVAP00000025099	A2M_recep domain-containing protein. (510 aa)
	LOC107093081	Chromobox homolog 7a. (357 aa)
	LOC107093815	Fibrosin. (1229 aa)
	scml2	SAM domain-containing protein. (694 aa)
	ENSCVAP00000028268	CD109 molecule. (963 aa)
	LOC107101139	A2M_N_2 domain-containing protein. (935 aa)
	ENSCVAP00000030538	Uncharacterized protein. (473 aa)
	LOC107100401	Uncharacterized protein. (296 aa)
	LOC107086252	Neuronal pentraxin IIb. (432 aa)

Your Current Organism:

Cyprinodon variegatus

NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CSNK2A2	ENSCVAP00000013511	ENSCVAP00000007618	ENSCVAP00000013511	Casein kinase 2 alpha 2; Belongs to the protein kinase superfamily.	Si:dkey-33o22.1.	0.493
CSNK2A2	LOC107082777	ENSCVAP00000007618	ENSCVAP00000002529	Casein kinase 2 alpha 2; Belongs to the protein kinase superfamily.	Casein kinase 2, alpha prime polypeptide a; Belongs to the protein kinase superfamily.	0.901
CSNK2A2	LOC107086178	ENSCVAP00000007618	ENSCVAP00000021071	Casein kinase 2 alpha 2; Belongs to the protein kinase superfamily.	Casein kinase II subunit beta; Plays a complex role in regulating the basal catalytic activity of the alpha subunit; Belongs to the casein kinase 2 subunit beta family.	0.987
CSNK2A2	LOC107093815	ENSCVAP00000007618	ENSCVAP00000026497	Casein kinase 2 alpha 2; Belongs to the protein kinase superfamily.	Fibrosin.	0.499
CSNK2A2	LOC107102531	ENSCVAP00000007618	ENSCVAP00000006810	Casein kinase 2 alpha 2; Belongs to the protein kinase superfamily.	Casein kinase II subunit beta; Plays a complex role in regulating the basal catalytic activity of the alpha subunit; Belongs to the casein kinase 2 subunit beta family.	0.881
CSNK2A2	LOC107102542	ENSCVAP00000007618	ENSCVAP00000024300	Casein kinase 2 alpha 2; Belongs to the protein kinase superfamily.	Zgc:86598; Belongs to the protein kinase superfamily.	0.950
CSNK2A2	PCGF3	ENSCVAP00000007618	ENSCVAP00000015584	Casein kinase 2 alpha 2; Belongs to the protein kinase superfamily.	Polycomb group ring finger 3.	0.549
CSNK2A2	RING1	ENSCVAP00000007618	ENSCVAP00000008579	Casein kinase 2 alpha 2; Belongs to the protein kinase superfamily.	Ring finger protein 1.	0.519
CSNK2A2	auts2	ENSCVAP00000007618	ENSCVAP00000005283	Casein kinase 2 alpha 2; Belongs to the protein kinase superfamily.	Activator of transcription and developmental regulator AUTS2 a.	0.493
CSNK2A2	pcgf5	ENSCVAP00000007618	ENSCVAP00000016686	Casein kinase 2 alpha 2; Belongs to the protein kinase superfamily.	Polycomb group ring finger 5a.	0.631
CSNK2A2	rnf2	ENSCVAP00000007618	ENSCVAP00000018052	Casein kinase 2 alpha 2; Belongs to the protein kinase superfamily.	Ring finger protein 2.	0.519
CSNK2A2	rybp	ENSCVAP00000007618	ENSCVAP00000017014	Casein kinase 2 alpha 2; Belongs to the protein kinase superfamily.	RING1 and YY1 binding protein b.	0.441
ENSCVAP00000001235	ENSCVAP00000006153	ENSCVAP00000001235	ENSCVAP00000006153	Chromobox homolog 7b.	COMM domain containing 3.	0.457
ENSCVAP00000001235	ENSCVAP00000006163	ENSCVAP00000001235	ENSCVAP00000006163	Chromobox homolog 7b.	Bmi1 polycomb ring finger oncogene 1a.	0.702
ENSCVAP00000001235	ENSCVAP00000015182	ENSCVAP00000001235	ENSCVAP00000015182	Chromobox homolog 7b.	Uncharacterized protein.	0.480
ENSCVAP00000001235	ENSCVAP00000028268	ENSCVAP00000001235	ENSCVAP00000028268	Chromobox homolog 7b.	CD109 molecule.	0.419
ENSCVAP00000001235	ENSCVAP00000030538	ENSCVAP00000001235	ENSCVAP00000030538	Chromobox homolog 7b.	Uncharacterized protein.	0.419
ENSCVAP00000001235	LOC107082907	ENSCVAP00000001235	ENSCVAP00000017101	Chromobox homolog 7b.	Uncharacterized protein.	0.544
ENSCVAP00000001235	LOC107085518	ENSCVAP00000001235	ENSCVAP00000005519	Chromobox homolog 7b.	Chromobox homolog 8b.	0.412
ENSCVAP00000001235	LOC107089015	ENSCVAP00000001235	ENSCVAP00000018662	Chromobox homolog 7b.	Uncharacterized protein.	0.517